GCA_018863155.1 - 7 region(s)

Identified primary metabolite regions

JAHLCI010000112 (original name was: JAHLCI010000112.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 14.1	fatty_acids-unassigned	Putative	1	13,442

JAHLCI010000150 (original name was: JAHLCI010000150.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 56.1	fatty_acids-unassigned	Putative	1	7,385	Acetate to butyrate C. sporogenes	BUT	50%

JAHLCI010000175 (original name was: JAHLCI010000175.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 83.1	Putrescine2spermidine	Aliphatic_amine	1	3,955	Arginine degradation C. sticklandii	ARG	22%

JAHLCI010000069 (original name was: JAHLCI010000069.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 168.1	TPP_AA_metabolism	Putative	1	21,898

JAHLCI010000076 (original name was: JAHLCI010000076.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 176.1	Fumarate2succinate	SCFA	3,026	20,418	Acetate to butyrate C. sporogenes	BUT	33%

JAHLCI010000007 (original name was: JAHLCI010000007.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 180.1	TPP_AA_metabolism	Putative	32,259	64,328

JAHLCI010000008 (original name was: JAHLCI010000008.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 191.1	Nitrate_reductase	E-MGC	40,570	61,308	Nitrate reductase E. coli	NIR	60%

Region	Type	Class	From	To	Most similar known cluster	Similarity
Region 14.1	fatty_acids-unassigned	Putative	1	13,442
Region 56.1	fatty_acids-unassigned	Putative	1	7,385	Acetate to butyrate C. sporogenes	BUT	50%
Region 83.1	Putrescine2spermidine	Aliphatic_amine	1	3,955	Arginine degradation C. sticklandii	ARG	22%
Region 168.1	TPP_AA_metabolism	Putative	1	21,898
Region 176.1	Fumarate2succinate	SCFA	3,026	20,418	Acetate to butyrate C. sporogenes	BUT	33%
Region 180.1	TPP_AA_metabolism	Putative	32,259	64,328
Region 191.1	Nitrate_reductase	E-MGC	40,570	61,308	Nitrate reductase E. coli	NIR	60%

No primary metabolite regions were found in these records:: JAHLCI010000100 (original name was: JAHLCI010000100.1); JAHLCI010000101 (original name was: JAHLCI010000101.1); JAHLCI010000102 (original name was: JAHLCI010000102.1); JAHLCI010000103 (original name was: JAHLCI010000103.1); JAHLCI010000104 (original name was: JAHLCI010000104.1); JAHLCI010000105 (original name was: JAHLCI010000105.1); JAHLCI010000106 (original name was: JAHLCI010000106.1); JAHLCI010000107 (original name was: JAHLCI010000107.1); JAHLCI010000108 (original name was: JAHLCI010000108.1); JAHLCI010000109 (original name was: JAHLCI010000109.1); JAHLCI010000010 (original name was: JAHLCI010000010.1); JAHLCI010000110 (original name was: JAHLCI010000110.1); JAHLCI010000111 (original name was: JAHLCI010000111.1); JAHLCI010000113 (original name was: JAHLCI010000113.1); JAHLCI010000114 (original name was: JAHLCI010000114.1); JAHLCI010000115 (original name was: JAHLCI010000115.1); JAHLCI010000116 (original name was: JAHLCI010000116.1); JAHLCI010000117 (original name was: JAHLCI010000117.1); JAHLCI010000118 (original name was: JAHLCI010000118.1); JAHLCI010000119 (original name was: JAHLCI010000119.1); JAHLCI010000011 (original name was: JAHLCI010000011.1); JAHLCI010000120 (original name was: JAHLCI010000120.1); JAHLCI010000121 (original name was: JAHLCI010000121.1); JAHLCI010000122 (original name was: JAHLCI010000122.1); JAHLCI010000123 (original name was: JAHLCI010000123.1); JAHLCI010000124 (original name was: JAHLCI010000124.1); JAHLCI010000125 (original name was: JAHLCI010000125.1); JAHLCI010000126 (original name was: JAHLCI010000126.1); JAHLCI010000127 (original name was: JAHLCI010000127.1); JAHLCI010000128 (original name was: JAHLCI010000128.1); JAHLCI010000129 (original name was: JAHLCI010000129.1); JAHLCI010000012 (original name was: JAHLCI010000012.1); JAHLCI010000130 (original name was: JAHLCI010000130.1); JAHLCI010000131 (original name was: JAHLCI010000131.1); JAHLCI010000132 (original name was: JAHLCI010000132.1); JAHLCI010000133 (original name was: JAHLCI010000133.1); JAHLCI010000134 (original name was: JAHLCI010000134.1); JAHLCI010000135 (original name was: JAHLCI010000135.1); JAHLCI010000136 (original name was: JAHLCI010000136.1); JAHLCI010000137 (original name was: JAHLCI010000137.1); JAHLCI010000138 (original name was: JAHLCI010000138.1); JAHLCI010000139 (original name was: JAHLCI010000139.1); JAHLCI010000013 (original name was: JAHLCI010000013.1); JAHLCI010000140 (original name was: JAHLCI010000140.1); JAHLCI010000141 (original name was: JAHLCI010000141.1); JAHLCI010000142 (original name was: JAHLCI010000142.1); JAHLCI010000143 (original name was: JAHLCI010000143.1); JAHLCI010000144 (original name was: JAHLCI010000144.1); JAHLCI010000145 (original name was: JAHLCI010000145.1); JAHLCI010000146 (original name was: JAHLCI010000146.1); JAHLCI010000147 (original name was: JAHLCI010000147.1); JAHLCI010000148 (original name was: JAHLCI010000148.1); JAHLCI010000149 (original name was: JAHLCI010000149.1); JAHLCI010000014 (original name was: JAHLCI010000014.1); JAHLCI010000151 (original name was: JAHLCI010000151.1); JAHLCI010000152 (original name was: JAHLCI010000152.1); JAHLCI010000153 (original name was: JAHLCI010000153.1); JAHLCI010000154 (original name was: JAHLCI010000154.1); JAHLCI010000155 (original name was: JAHLCI010000155.1); JAHLCI010000156 (original name was: JAHLCI010000156.1); JAHLCI010000157 (original name was: JAHLCI010000157.1); JAHLCI010000158 (original name was: JAHLCI010000158.1); JAHLCI010000159 (original name was: JAHLCI010000159.1); JAHLCI010000015 (original name was: JAHLCI010000015.1); JAHLCI010000160 (original name was: JAHLCI010000160.1); JAHLCI010000161 (original name was: JAHLCI010000161.1); JAHLCI010000162 (original name was: JAHLCI010000162.1); JAHLCI010000163 (original name was: JAHLCI010000163.1); JAHLCI010000164 (original name was: JAHLCI010000164.1); JAHLCI010000165 (original name was: JAHLCI010000165.1); JAHLCI010000166 (original name was: JAHLCI010000166.1); JAHLCI010000167 (original name was: JAHLCI010000167.1); JAHLCI010000168 (original name was: JAHLCI010000168.1); JAHLCI010000169 (original name was: JAHLCI010000169.1); JAHLCI010000016 (original name was: JAHLCI010000016.1); JAHLCI010000170 (original name was: JAHLCI010000170.1); JAHLCI010000171 (original name was: JAHLCI010000171.1); JAHLCI010000172 (original name was: JAHLCI010000172.1); JAHLCI010000173 (original name was: JAHLCI010000173.1); JAHLCI010000174 (original name was: JAHLCI010000174.1); JAHLCI010000176 (original name was: JAHLCI010000176.1); JAHLCI010000177 (original name was: JAHLCI010000177.1); JAHLCI010000178 (original name was: JAHLCI010000178.1); JAHLCI010000179 (original name was: JAHLCI010000179.1); JAHLCI010000017 (original name was: JAHLCI010000017.1); JAHLCI010000180 (original name was: JAHLCI010000180.1); JAHLCI010000181 (original name was: JAHLCI010000181.1); JAHLCI010000182 (original name was: JAHLCI010000182.1); JAHLCI010000183 (original name was: JAHLCI010000183.1); JAHLCI010000184 (original name was: JAHLCI010000184.1); JAHLCI010000185 (original name was: JAHLCI010000185.1); JAHLCI010000186 (original name was: JAHLCI010000186.1); JAHLCI010000187 (original name was: JAHLCI010000187.1); JAHLCI010000188 (original name was: JAHLCI010000188.1); JAHLCI010000189 (original name was: JAHLCI010000189.1); JAHLCI010000018 (original name was: JAHLCI010000018.1); JAHLCI010000190 (original name was: JAHLCI010000190.1); JAHLCI010000191 (original name was: JAHLCI010000191.1); JAHLCI010000192 (original name was: JAHLCI010000192.1); JAHLCI010000193 (original name was: JAHLCI010000193.1); JAHLCI010000194 (original name was: JAHLCI010000194.1); JAHLCI010000195 (original name was: JAHLCI010000195.1); JAHLCI010000196 (original name was: JAHLCI010000196.1); JAHLCI010000197 (original name was: JAHLCI010000197.1); JAHLCI010000198 (original name was: JAHLCI010000198.1); JAHLCI010000199 (original name was: JAHLCI010000199.1); JAHLCI010000019 (original name was: JAHLCI010000019.1); JAHLCI010000001 (original name was: JAHLCI010000001.1); JAHLCI010000200 (original name was: JAHLCI010000200.1); JAHLCI010000201 (original name was: JAHLCI010000201.1); JAHLCI010000202 (original name was: JAHLCI010000202.1); JAHLCI010000020 (original name was: JAHLCI010000020.1); JAHLCI010000021 (original name was: JAHLCI010000021.1); JAHLCI010000022 (original name was: JAHLCI010000022.1); JAHLCI010000023 (original name was: JAHLCI010000023.1); JAHLCI010000024 (original name was: JAHLCI010000024.1); JAHLCI010000025 (original name was: JAHLCI010000025.1); JAHLCI010000026 (original name was: JAHLCI010000026.1); JAHLCI010000027 (original name was: JAHLCI010000027.1); JAHLCI010000028 (original name was: JAHLCI010000028.1); JAHLCI010000029 (original name was: JAHLCI010000029.1); JAHLCI010000002 (original name was: JAHLCI010000002.1); JAHLCI010000030 (original name was: JAHLCI010000030.1); JAHLCI010000031 (original name was: JAHLCI010000031.1); JAHLCI010000032 (original name was: JAHLCI010000032.1); JAHLCI010000033 (original name was: JAHLCI010000033.1); JAHLCI010000034 (original name was: JAHLCI010000034.1); JAHLCI010000035 (original name was: JAHLCI010000035.1); JAHLCI010000036 (original name was: JAHLCI010000036.1); JAHLCI010000037 (original name was: JAHLCI010000037.1); JAHLCI010000038 (original name was: JAHLCI010000038.1); JAHLCI010000039 (original name was: JAHLCI010000039.1); JAHLCI010000003 (original name was: JAHLCI010000003.1); JAHLCI010000040 (original name was: JAHLCI010000040.1); JAHLCI010000041 (original name was: JAHLCI010000041.1); JAHLCI010000042 (original name was: JAHLCI010000042.1); JAHLCI010000043 (original name was: JAHLCI010000043.1); JAHLCI010000044 (original name was: JAHLCI010000044.1); JAHLCI010000045 (original name was: JAHLCI010000045.1); JAHLCI010000046 (original name was: JAHLCI010000046.1); JAHLCI010000047 (original name was: JAHLCI010000047.1); JAHLCI010000048 (original name was: JAHLCI010000048.1); JAHLCI010000049 (original name was: JAHLCI010000049.1); JAHLCI010000004 (original name was: JAHLCI010000004.1); JAHLCI010000050 (original name was: JAHLCI010000050.1); JAHLCI010000051 (original name was: JAHLCI010000051.1); JAHLCI010000052 (original name was: JAHLCI010000052.1); JAHLCI010000053 (original name was: JAHLCI010000053.1); JAHLCI010000054 (original name was: JAHLCI010000054.1); JAHLCI010000055 (original name was: JAHLCI010000055.1); JAHLCI010000056 (original name was: JAHLCI010000056.1); JAHLCI010000057 (original name was: JAHLCI010000057.1); JAHLCI010000058 (original name was: JAHLCI010000058.1); JAHLCI010000059 (original name was: JAHLCI010000059.1); JAHLCI010000005 (original name was: JAHLCI010000005.1); JAHLCI010000060 (original name was: JAHLCI010000060.1); JAHLCI010000061 (original name was: JAHLCI010000061.1); JAHLCI010000062 (original name was: JAHLCI010000062.1); JAHLCI010000063 (original name was: JAHLCI010000063.1); JAHLCI010000064 (original name was: JAHLCI010000064.1); JAHLCI010000065 (original name was: JAHLCI010000065.1); JAHLCI010000066 (original name was: JAHLCI010000066.1); JAHLCI010000067 (original name was: JAHLCI010000067.1); JAHLCI010000068 (original name was: JAHLCI010000068.1); JAHLCI010000006 (original name was: JAHLCI010000006.1); JAHLCI010000070 (original name was: JAHLCI010000070.1); JAHLCI010000071 (original name was: JAHLCI010000071.1); JAHLCI010000072 (original name was: JAHLCI010000072.1); JAHLCI010000073 (original name was: JAHLCI010000073.1); JAHLCI010000074 (original name was: JAHLCI010000074.1); JAHLCI010000075 (original name was: JAHLCI010000075.1); JAHLCI010000077 (original name was: JAHLCI010000077.1); JAHLCI010000078 (original name was: JAHLCI010000078.1); JAHLCI010000079 (original name was: JAHLCI010000079.1); JAHLCI010000080 (original name was: JAHLCI010000080.1); JAHLCI010000081 (original name was: JAHLCI010000081.1); JAHLCI010000082 (original name was: JAHLCI010000082.1); JAHLCI010000083 (original name was: JAHLCI010000083.1); JAHLCI010000084 (original name was: JAHLCI010000084.1); JAHLCI010000085 (original name was: JAHLCI010000085.1); JAHLCI010000086 (original name was: JAHLCI010000086.1); JAHLCI010000087 (original name was: JAHLCI010000087.1); JAHLCI010000088 (original name was: JAHLCI010000088.1); JAHLCI010000089 (original name was: JAHLCI010000089.1); JAHLCI010000090 (original name was: JAHLCI010000090.1); JAHLCI010000091 (original name was: JAHLCI010000091.1); JAHLCI010000092 (original name was: JAHLCI010000092.1); JAHLCI010000093 (original name was: JAHLCI010000093.1); JAHLCI010000094 (original name was: JAHLCI010000094.1); JAHLCI010000095 (original name was: JAHLCI010000095.1); JAHLCI010000096 (original name was: JAHLCI010000096.1); JAHLCI010000097 (original name was: JAHLCI010000097.1); JAHLCI010000098 (original name was: JAHLCI010000098.1); JAHLCI010000099 (original name was: JAHLCI010000099.1); JAHLCI010000009 (original name was: JAHLCI010000009.1)

Compact view

c00014_JAHLCI0.. - Region 1 - fatty_acids-unassigned

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Location: 1 - 13,442 nt. (total: 13,442 nt) Show pHMM detection rules used

Region on contig edge.

fatty_acids-unassigned: (not (EC1_2-faecali or baiH or baiCD or ECH1_Enoyl_CoA_DH1 or ECH1_Enoyl_CoA_DH2 or ECH1_Enoyl_CoA_DH3 or ECH1_Enoyl_CoA_DH4 or POR or POR_N or PFOR_II) and minimum(4, [AcetylCoA_hyd_C, Acyl-CoA_dh_1, Acyl-CoA_dh_2, EC1_2-faecali, ECH1_8_CARC, ECH_1, ECH_2, HBT, HCDH, HCDH_N, Thiolase_C, Thiolase_N, ketoacyl-synt]))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

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Gene details

Select a gene to view the details available for it

KnownClusterBlast

Similar known gene clusters

No matches found.

c00056_JAHLCI0.. - Region 1 - fatty_acids-unassigned

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Location: 1 - 7,385 nt. (total: 7,385 nt) Show pHMM detection rules used

Region on contig edge.

fatty_acids-unassigned: (not (EC1_2-faecali or baiH or baiCD or ECH1_Enoyl_CoA_DH1 or ECH1_Enoyl_CoA_DH2 or ECH1_Enoyl_CoA_DH3 or ECH1_Enoyl_CoA_DH4 or POR or POR_N or PFOR_II) and minimum(4, [AcetylCoA_hyd_C, Acyl-CoA_dh_1, Acyl-CoA_dh_2, EC1_2-faecali, ECH1_8_CARC, ECH_1, ECH_2, HBT, HCDH, HCDH_N, Thiolase_C, Thiolase_N, ketoacyl-synt]))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

KnownClusterBlast

Similar known gene clusters

c00083_JAHLCI0.. - Region 1 - Putrescine2spermidine

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Location: 1 - 3,955 nt. (total: 3,955 nt) Show pHMM detection rules used

Region on contig edge.

Putrescine2spermidine: (minimum(2, [AdoMet_dc, Spermine_synt_N, Spermine_synth]) or (Orn_DAP_Arg_deC and Sacchrp_dh_C))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

KnownClusterBlast

Similar known gene clusters

c00168_JAHLCI0.. - Region 1 - TPP_AA_metabolism

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Location: 1 - 21,898 nt. (total: 21,898 nt) Show pHMM detection rules used

Region on contig edge.

TPP_AA_metabolism: (TPP_enzyme_C and not (PFL-like or PFL_6_pcresol or PFL_9_tma or Gly_radical or Gly_430_pcre or Gly_8-9_TMA or PFL_acetate1 or PFL_acetate2 or Gly_radical_scatole or PFL_proline or PFL_toluene) and minimum(2, [ALS_ss_C, AlaDh_PNT_C, Arginase, BKACE, BcrAD_BadFG, Beta_elim_lyase, CPSase_L_D2, Cys_Met_Meta_PP, ELFV_dehydrog, GRDB, Glu_syn_central, Glu_synthase, Gly_reductase, HAAA1, HG2B1, HG2B2, HGD-D, HleuD1, HleuD2, HleuS1, HleuS2, Homoserine_dh, ILVD_EDD, IlvC, Lactoyl-CoA1, Lactoyl-CoA2, Lyase_aromatic, MAAL_C, OKR_DC_1_5_lysine, OKR_DC_1_5_ornithine, OKR_DC_1_7_arginine, OKR_DC_1_C, OTCace, PALP, Proline_reductase, Sacchrp_dh_C, TPL, Thr_dehydrat_C, TnaA, Urocanase]) and not (POR or POR_N or PFOR_II))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

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Gene details

Select a gene to view the details available for it

KnownClusterBlast

Similar known gene clusters

No matches found.

c00176_JAHLCI0.. - Region 1 - Fumarate2succinate

Download region GenBank file

Location: 3,026 - 20,418 nt. (total: 17,393 nt) Show pHMM detection rules used

Region on contig edge.

Fumarate2succinate: (Succ_DH_flav_C and FAD_binding_2 and (Fer2_3 or Fer4_7 or SucD_FumR))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

reset view

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Gene details

Select a gene to view the details available for it

KnownClusterBlast

Similar known gene clusters

c00180_JAHLCI0.. - Region 1 - TPP_AA_metabolism

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Location: 32,259 - 64,328 nt. (total: 32,070 nt) Show pHMM detection rules used

Region on contig edge.

TPP_AA_metabolism: (TPP_enzyme_C and not (PFL-like or PFL_6_pcresol or PFL_9_tma or Gly_radical or Gly_430_pcre or Gly_8-9_TMA or PFL_acetate1 or PFL_acetate2 or Gly_radical_scatole or PFL_proline or PFL_toluene) and minimum(2, [ALS_ss_C, AlaDh_PNT_C, Arginase, BKACE, BcrAD_BadFG, Beta_elim_lyase, CPSase_L_D2, Cys_Met_Meta_PP, ELFV_dehydrog, GRDB, Glu_syn_central, Glu_synthase, Gly_reductase, HAAA1, HG2B1, HG2B2, HGD-D, HleuD1, HleuD2, HleuS1, HleuS2, Homoserine_dh, ILVD_EDD, IlvC, Lactoyl-CoA1, Lactoyl-CoA2, Lyase_aromatic, MAAL_C, OKR_DC_1_5_lysine, OKR_DC_1_5_ornithine, OKR_DC_1_7_arginine, OKR_DC_1_C, OTCace, PALP, Proline_reductase, Sacchrp_dh_C, TPL, Thr_dehydrat_C, TnaA, Urocanase]) and not (POR or POR_N or PFOR_II))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

KnownClusterBlast

Similar known gene clusters

No matches found.

c00191_JAHLCI0.. - Region 1 - Nitrate_reductase

Download region GenBank file

Location: 40,570 - 61,308 nt. (total: 20,739 nt) Show pHMM detection rules used

Region on contig edge.

Nitrate_reductase: (Nitr_red_bet_C and Nitrate_red_del and Nitrate_red_gam and Molybdopterin and minimum(2, [Fer4_11, Molybdopterin, Molydop_binding, Nitr_red_alph_N]))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

KnownClusterBlast

Similar known gene clusters