GCA_018993325.1 - 4 region(s) - antiSMASH results

Identified secondary metabolite regions using strictness 'relaxed'

JAGYGT010000001 (original name was: JAGYGT010000001.1)

Region	Type	From	To	Most similar known cluster		Similarity
Region 1.1	RiPP-like	40,799	52,910
Region 1.2	cyclic-lactone-autoinducer	527,865	548,570

JAGYGT010000010 (original name was: JAGYGT010000010.1)

Region	Type	From	To	Most similar known cluster		Similarity
Region 2.1	NRPS-like	1	30,399

JAGYGT010000003 (original name was: JAGYGT010000003.1)

Region	Type	From	To	Most similar known cluster		Similarity
Region 23.1	terpene	24,663	45,544

Region	Type	From	To	Similarity
Region 1.1	RiPP-like	40,799	52,910
Region 1.2	cyclic-lactone-autoinducer	527,865	548,570
Region 2.1	NRPS-like	1	30,399
Region 23.1	terpene	24,663	45,544

No secondary metabolite regions were found in these records:: JAGYGT010000011 (original name was: JAGYGT010000011.1); JAGYGT010000012 (original name was: JAGYGT010000012.1); JAGYGT010000013 (original name was: JAGYGT010000013.1); JAGYGT010000014 (original name was: JAGYGT010000014.1); JAGYGT010000015 (original name was: JAGYGT010000015.1); JAGYGT010000016 (original name was: JAGYGT010000016.1); JAGYGT010000017 (original name was: JAGYGT010000017.1); JAGYGT010000018 (original name was: JAGYGT010000018.1); JAGYGT010000019 (original name was: JAGYGT010000019.1); JAGYGT010000002 (original name was: JAGYGT010000002.1); JAGYGT010000020 (original name was: JAGYGT010000020.1); JAGYGT010000021 (original name was: JAGYGT010000021.1); JAGYGT010000022 (original name was: JAGYGT010000022.1); JAGYGT010000023 (original name was: JAGYGT010000023.1); JAGYGT010000024 (original name was: JAGYGT010000024.1); JAGYGT010000025 (original name was: JAGYGT010000025.1); JAGYGT010000026 (original name was: JAGYGT010000026.1); JAGYGT010000027 (original name was: JAGYGT010000027.1); JAGYGT010000028 (original name was: JAGYGT010000028.1); JAGYGT010000029 (original name was: JAGYGT010000029.1); JAGYGT010000030 (original name was: JAGYGT010000030.1); JAGYGT010000031 (original name was: JAGYGT010000031.1); JAGYGT010000032 (original name was: JAGYGT010000032.1); JAGYGT010000033 (original name was: JAGYGT010000033.1); JAGYGT010000034 (original name was: JAGYGT010000034.1); JAGYGT010000035 (original name was: JAGYGT010000035.1); JAGYGT010000036 (original name was: JAGYGT010000036.1); JAGYGT010000037 (original name was: JAGYGT010000037.1); JAGYGT010000038 (original name was: JAGYGT010000038.1); JAGYGT010000039 (original name was: JAGYGT010000039.1); JAGYGT010000004 (original name was: JAGYGT010000004.1); JAGYGT010000040 (original name was: JAGYGT010000040.1); JAGYGT010000041 (original name was: JAGYGT010000041.1); JAGYGT010000042 (original name was: JAGYGT010000042.1); JAGYGT010000043 (original name was: JAGYGT010000043.1); JAGYGT010000005 (original name was: JAGYGT010000005.1); JAGYGT010000006 (original name was: JAGYGT010000006.1); JAGYGT010000007 (original name was: JAGYGT010000007.1); JAGYGT010000008 (original name was: JAGYGT010000008.1); JAGYGT010000009 (original name was: JAGYGT010000009.1)

Compact view

c00001_JAGYGT0.. - Region 1 - RiPP-like

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Location: 40,799 - 52,910 nt. (total: 12,112 nt) Show pHMM detection rules used

RiPP-like: (strepbact or Antimicrobial14 or Bacteriocin_IId or BacteriocIIc_cy or Bacteriocin_II or Bacteriocin_IIi or Lactococcin or Antimicrobial17 or Lactococcin_972 or Bacteriocin_IIc or LcnG-beta or Cloacin or Linocin_M18 or TIGR03651 or TIGR03693 or TIGR03601 or TIGR03795 or TIGR03975 or DUF692 or TIGR01193)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

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KnownClusterBlast

Similar known gene clusters

No matches found.

c00001_JAGYGT0.. - Region 2 - cyclic-lactone-autoinducer

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Location: 527,865 - 548,570 nt. (total: 20,706 nt) Show pHMM detection rules used

cyclic-lactone-autoinducer: (TIGR04223 or AgrB)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

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KnownClusterBlast

Similar known gene clusters

No matches found.

c00002_JAGYGT0.. - Region 1 - NRPS-like

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Location: 1 - 30,399 nt. (total: 30,399 nt) Show pHMM detection rules used

Region on contig edge.

NRPS-like: cds((PP-binding or NAD_binding_4) and (AMP-binding or A-OX))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

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NRPS/PKS domains

KnownClusterBlast

Detailed domain annotation

Selected features only

Show module domains

Similar known gene clusters

No matches found.

NRPS/PKS products

NRPS/PKS monomers

Predicted core structure(s)

For candidate cluster 1, location 0 - 30399:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (thr)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS monomer predictions

ctg2_6

Search NORINE for peptide: strict or relaxed

AMP-binding (40..421): X

NRPSPredictor2: (unknown)

SVM prediction details:

NOTE: outside applicability domain

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: N/A
Small clusters prediction:: N/A
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: vfsFaGGPiK
Nearest Stachelhaus code:: ala
Stachelhaus code match:: 50% (weak)

ctg2_8

PKS_AT (7..289): pk

ATSignature: Malonyl-CoA

Top 3 matches:: Malonyl-CoA: 75.0%; inactive: 58.3%; 2-Methylbutyryl-CoA: 54.2%

minowa: Methoxymalonyl-CoA

Prediction, score:

Methoxymalonyl-CoA: 21.1
Malonyl-CoA: 9.2
inactive: 0.8
trans-1,2-CPDA: 0.0
fatty_acid: 0.0
Propionyl-CoA: 0.0
Methylmalonyl-CoA: 0.0
Isobutyryl-CoA: 0.0
Ethylmalonyl-CoA: 0.0
CHC-CoA: 0.0
Benzoyl-CoA: 0.0
Acetyl-CoA: 0.0
3-Methylbutyryl-CoA: 0.0
2-Methylbutyryl-CoA: 0.0

ctg2_10

Search NORINE for peptide: strict or relaxed

AMP-binding (31..384): thr

NRPSPredictor2: thr

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: ser, thr, dhpg, hpg
Small clusters prediction:: thr
Single AA prediction:: thr

Stachelhaus prediction details:

Stachelhaus sequence:: DFWNIGliHK
Nearest Stachelhaus code:: thr
Stachelhaus code match:: 80% (moderate)

c00023_JAGYGT0.. - Region 1 - terpene

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Location: 24,663 - 45,544 nt. (total: 20,882 nt) Show pHMM detection rules used

terpene: (Terpene_synth or Terpene_synth_C or phytoene_synt or Lycopene_cycl or terpene_cyclase or NapT7 or fung_ggpps or fung_ggpps2 or trichodiene_synth or TRI5)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

KnownClusterBlast

Similar known gene clusters

No matches found.