GCA_019037585.1 - 6 region(s)

Identified primary metabolite regions

JAHHYG010000001 (original name was: JAHHYG010000001.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 11.1	Fumarate2succinate	SCFA	90,867	113,385	Acetate to butyrate C. sporogenes	BUT	33%
Region 11.2	TPP_AA_metabolism	Putative	118,358	139,958
Region 11.3	TPP_AA_metabolism	Putative	286,191	319,791

JAHHYG010000022 (original name was: JAHHYG010000022.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 14.1	fatty_acids-unassigned	Putative	55,370	80,738	Acetate to butyrate C. sporogenes	BUT	33%

JAHHYG010000005 (original name was: JAHHYG010000005.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 51.1	fatty_acids-unassigned,Putrescine2spermidine	Aliphatic_amine	121,150	152,601	Acetate to butyrate C. sporogenes	BUT	50%

JAHHYG010000007 (original name was: JAHHYG010000007.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 53.1	Nitrate_reductase	E-MGC	154,331	180,775	Nitrate reductase E. coli	NIR	60%

No primary metabolite regions were found in these records:: JAHHYG010000010 (original name was: JAHHYG010000010.1); JAHHYG010000011 (original name was: JAHHYG010000011.1); JAHHYG010000012 (original name was: JAHHYG010000012.1); JAHHYG010000013 (original name was: JAHHYG010000013.1); JAHHYG010000014 (original name was: JAHHYG010000014.1); JAHHYG010000015 (original name was: JAHHYG010000015.1); JAHHYG010000016 (original name was: JAHHYG010000016.1); JAHHYG010000017 (original name was: JAHHYG010000017.1); JAHHYG010000018 (original name was: JAHHYG010000018.1); JAHHYG010000019 (original name was: JAHHYG010000019.1); JAHHYG010000020 (original name was: JAHHYG010000020.1); JAHHYG010000021 (original name was: JAHHYG010000021.1); JAHHYG010000023 (original name was: JAHHYG010000023.1); JAHHYG010000024 (original name was: JAHHYG010000024.1); JAHHYG010000025 (original name was: JAHHYG010000025.1); JAHHYG010000026 (original name was: JAHHYG010000026.1); JAHHYG010000027 (original name was: JAHHYG010000027.1); JAHHYG010000028 (original name was: JAHHYG010000028.1); JAHHYG010000029 (original name was: JAHHYG010000029.1); JAHHYG010000002 (original name was: JAHHYG010000002.1); JAHHYG010000030 (original name was: JAHHYG010000030.1); JAHHYG010000031 (original name was: JAHHYG010000031.1); JAHHYG010000032 (original name was: JAHHYG010000032.1); JAHHYG010000033 (original name was: JAHHYG010000033.1); JAHHYG010000034 (original name was: JAHHYG010000034.1); JAHHYG010000035 (original name was: JAHHYG010000035.1); JAHHYG010000036 (original name was: JAHHYG010000036.1); JAHHYG010000037 (original name was: JAHHYG010000037.1); JAHHYG010000038 (original name was: JAHHYG010000038.1); JAHHYG010000039 (original name was: JAHHYG010000039.1); JAHHYG010000003 (original name was: JAHHYG010000003.1); JAHHYG010000040 (original name was: JAHHYG010000040.1); JAHHYG010000041 (original name was: JAHHYG010000041.1); JAHHYG010000042 (original name was: JAHHYG010000042.1); JAHHYG010000043 (original name was: JAHHYG010000043.1); JAHHYG010000044 (original name was: JAHHYG010000044.1); JAHHYG010000045 (original name was: JAHHYG010000045.1); JAHHYG010000046 (original name was: JAHHYG010000046.1); JAHHYG010000047 (original name was: JAHHYG010000047.1); JAHHYG010000048 (original name was: JAHHYG010000048.1); JAHHYG010000049 (original name was: JAHHYG010000049.1); JAHHYG010000004 (original name was: JAHHYG010000004.1); JAHHYG010000050 (original name was: JAHHYG010000050.1); JAHHYG010000051 (original name was: JAHHYG010000051.1); JAHHYG010000052 (original name was: JAHHYG010000052.1); JAHHYG010000053 (original name was: JAHHYG010000053.1); JAHHYG010000054 (original name was: JAHHYG010000054.1); JAHHYG010000055 (original name was: JAHHYG010000055.1); JAHHYG010000006 (original name was: JAHHYG010000006.1); JAHHYG010000008 (original name was: JAHHYG010000008.1); JAHHYG010000009 (original name was: JAHHYG010000009.1)

Compact view

c00011_JAHHYG0.. - Region 1 - Fumarate2succinate

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Location: 90,867 - 113,385 nt. (total: 22,519 nt) Show pHMM detection rules used

Fumarate2succinate: (Succ_DH_flav_C and FAD_binding_2 and (Fer2_3 or Fer4_7 or SucD_FumR))

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c00011_JAHHYG0.. - Region 2 - TPP_AA_metabolism

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Location: 118,358 - 139,958 nt. (total: 21,601 nt) Show pHMM detection rules used

TPP_AA_metabolism: (TPP_enzyme_C and not (PFL-like or PFL_6_pcresol or PFL_9_tma or Gly_radical or Gly_430_pcre or Gly_8-9_TMA or PFL_acetate1 or PFL_acetate2 or Gly_radical_scatole or PFL_proline or PFL_toluene) and minimum(2, [ALS_ss_C, AlaDh_PNT_C, Arginase, BKACE, BcrAD_BadFG, Beta_elim_lyase, CPSase_L_D2, Cys_Met_Meta_PP, ELFV_dehydrog, GRDB, Glu_syn_central, Glu_synthase, Gly_reductase, HAAA1, HG2B1, HG2B2, HGD-D, HleuD1, HleuD2, HleuS1, HleuS2, Homoserine_dh, ILVD_EDD, IlvC, Lactoyl-CoA1, Lactoyl-CoA2, Lyase_aromatic, MAAL_C, OKR_DC_1_5_lysine, OKR_DC_1_5_ornithine, OKR_DC_1_7_arginine, OKR_DC_1_C, OTCace, PALP, Proline_reductase, Sacchrp_dh_C, TPL, Thr_dehydrat_C, TnaA, Urocanase]) and not (POR or POR_N or PFOR_II))

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c00011_JAHHYG0.. - Region 3 - TPP_AA_metabolism

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Location: 286,191 - 319,791 nt. (total: 33,601 nt) Show pHMM detection rules used

Region on contig edge.

TPP_AA_metabolism: (TPP_enzyme_C and not (PFL-like or PFL_6_pcresol or PFL_9_tma or Gly_radical or Gly_430_pcre or Gly_8-9_TMA or PFL_acetate1 or PFL_acetate2 or Gly_radical_scatole or PFL_proline or PFL_toluene) and minimum(2, [ALS_ss_C, AlaDh_PNT_C, Arginase, BKACE, BcrAD_BadFG, Beta_elim_lyase, CPSase_L_D2, Cys_Met_Meta_PP, ELFV_dehydrog, GRDB, Glu_syn_central, Glu_synthase, Gly_reductase, HAAA1, HG2B1, HG2B2, HGD-D, HleuD1, HleuD2, HleuS1, HleuS2, Homoserine_dh, ILVD_EDD, IlvC, Lactoyl-CoA1, Lactoyl-CoA2, Lyase_aromatic, MAAL_C, OKR_DC_1_5_lysine, OKR_DC_1_5_ornithine, OKR_DC_1_7_arginine, OKR_DC_1_C, OTCace, PALP, Proline_reductase, Sacchrp_dh_C, TPL, Thr_dehydrat_C, TnaA, Urocanase]) and not (POR or POR_N or PFOR_II))

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c00014_JAHHYG0.. - Region 1 - fatty_acids-unassigned

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Location: 55,370 - 80,738 nt. (total: 25,369 nt) Show pHMM detection rules used

fatty_acids-unassigned: (not (EC1_2-faecali or baiH or baiCD or ECH1_Enoyl_CoA_DH1 or ECH1_Enoyl_CoA_DH2 or ECH1_Enoyl_CoA_DH3 or ECH1_Enoyl_CoA_DH4 or POR or POR_N or PFOR_II) and minimum(4, [AcetylCoA_hyd_C, Acyl-CoA_dh_1, Acyl-CoA_dh_2, EC1_2-faecali, ECH1_8_CARC, ECH_1, ECH_2, HBT, HCDH, HCDH_N, Thiolase_C, Thiolase_N, ketoacyl-synt]))

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c00051_JAHHYG0.. - Region 1 - Putrescine2spermidine,fatty_acids-unassigned

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Location: 121,150 - 152,601 nt. (total: 31,452 nt) Show pHMM detection rules used

fatty_acids-unassigned: (not (EC1_2-faecali or baiH or baiCD or ECH1_Enoyl_CoA_DH1 or ECH1_Enoyl_CoA_DH2 or ECH1_Enoyl_CoA_DH3 or ECH1_Enoyl_CoA_DH4 or POR or POR_N or PFOR_II) and minimum(4, [AcetylCoA_hyd_C, Acyl-CoA_dh_1, Acyl-CoA_dh_2, EC1_2-faecali, ECH1_8_CARC, ECH_1, ECH_2, HBT, HCDH, HCDH_N, Thiolase_C, Thiolase_N, ketoacyl-synt]))
Putrescine2spermidine: (minimum(2, [AdoMet_dc, Spermine_synt_N, Spermine_synth]) or (Orn_DAP_Arg_deC and Sacchrp_dh_C))

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c00053_JAHHYG0.. - Region 1 - Nitrate_reductase

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Location: 154,331 - 180,775 nt. (total: 26,445 nt) Show pHMM detection rules used

Nitrate_reductase: (Nitr_red_bet_C and Nitrate_red_del and Nitrate_red_gam and Molybdopterin and minimum(2, [Fer4_11, Molybdopterin, Molydop_binding, Nitr_red_alph_N]))

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