GCA_019041375.1 - 2 region(s)

Identified primary metabolite regions

JAHPXX010000002 (original name was: JAHPXX010000002.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 22.1	Pyruvate2acetate-formate,Fumarate2succinate	SCFA	140,306	185,846	Pyruvate to acetate-formate E. coli	PFL_acetate	100%

JAHPXX010000006 (original name was: JAHPXX010000006.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 30.1	Others_HGD_unassigned	Putative	1	21,774

No primary metabolite regions were found in these records:: JAHPXX010000010 (original name was: JAHPXX010000010.1); JAHPXX010000011 (original name was: JAHPXX010000011.1); JAHPXX010000012 (original name was: JAHPXX010000012.1); JAHPXX010000013 (original name was: JAHPXX010000013.1); JAHPXX010000014 (original name was: JAHPXX010000014.1); JAHPXX010000015 (original name was: JAHPXX010000015.1); JAHPXX010000016 (original name was: JAHPXX010000016.1); JAHPXX010000017 (original name was: JAHPXX010000017.1); JAHPXX010000018 (original name was: JAHPXX010000018.1); JAHPXX010000019 (original name was: JAHPXX010000019.1); JAHPXX010000001 (original name was: JAHPXX010000001.1); JAHPXX010000020 (original name was: JAHPXX010000020.1); JAHPXX010000021 (original name was: JAHPXX010000021.1); JAHPXX010000022 (original name was: JAHPXX010000022.1); JAHPXX010000023 (original name was: JAHPXX010000023.1); JAHPXX010000024 (original name was: JAHPXX010000024.1); JAHPXX010000025 (original name was: JAHPXX010000025.1); JAHPXX010000026 (original name was: JAHPXX010000026.1); JAHPXX010000027 (original name was: JAHPXX010000027.1); JAHPXX010000028 (original name was: JAHPXX010000028.1); JAHPXX010000029 (original name was: JAHPXX010000029.1); JAHPXX010000030 (original name was: JAHPXX010000030.1); JAHPXX010000031 (original name was: JAHPXX010000031.1); JAHPXX010000032 (original name was: JAHPXX010000032.1); JAHPXX010000003 (original name was: JAHPXX010000003.1); JAHPXX010000033 (original name was: JAHPXX010000033.1); JAHPXX010000004 (original name was: JAHPXX010000004.1); JAHPXX010000005 (original name was: JAHPXX010000005.1); JAHPXX010000007 (original name was: JAHPXX010000007.1); JAHPXX010000008 (original name was: JAHPXX010000008.1); JAHPXX010000009 (original name was: JAHPXX010000009.1)

Compact view

c00022_JAHPXX0.. - Region 1 - Fumarate2succinate,Pyruvate2acetate-formate

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Location: 140,306 - 185,846 nt. (total: 45,541 nt) Show pHMM detection rules used

Pyruvate2acetate-formate: ((PFL_acetate1 or PFL_acetate2) and Radical_SAM)
Fumarate2succinate: (Succ_DH_flav_C and FAD_binding_2 and (Fer2_3 or Fer4_7 or SucD_FumR))

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core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

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Gene details

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KnownClusterBlast

Similar known gene clusters

c00030_JAHPXX0.. - Region 1 - Others_HGD_unassigned

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Location: 1 - 21,774 nt. (total: 21,774 nt) Show pHMM detection rules used

Region on contig edge.

Others_HGD_unassigned: (minimum(1, [HAAA1, HG2B1, HG2B2, HGD-D, HleuD1, HleuD2, HleuS1, HleuS2, Lactoyl-CoA1, Lactoyl-CoA2]) and minimum(1, [ACP_syn_III, ACP_syn_III_C, AcetylCoA_hyd_C, AcetylCoA_hydro, Acyl-CoA_dh_1, Acyl-CoA_dh_2, AdoHcyase_NAD, AlaDh_PNT_C, BcrAD_BadFG, Biotin_lipoyl, Carboxyl_trans, CoA_trans, CoA_trans_230_acto, CoA_trans_6_Glutaconate, CoA_transf_3, ECH_1, ECH_2, ETF, ETF_alpha, FGGY_C, HCDH, HCDH_N, Hacid_dh, Hacid_dh_C, Mal_decarbox_Al, Peptidase_M22, Peptidase_M23, Thiolase_C, Thiolase_N, ketoacyl-synt]) and not (minimum(2, [AcetylCoA_hyd_C, BcrAD_BadFG, CoA_trans, CoA_trans_230_acto, Mal_decarbox_Al]) and Lactoyl-CoA2 and Lactoyl-CoA1) and not (minimum(4, [ACP_syn_III, ACP_syn_III_C, Acyl-CoA_dh_1, Acyl-CoA_dh_2, AlaDh_PNT_C, BcrAD_BadFG, ECH_1, ECH_2, ETF, ETF_alpha, HCDH, HCDH_N, Hacid_dh, Hacid_dh_C, IlvN, NAD_Gly3P_dh_N, Thiolase_C, Thiolase_N, ketoacyl-synt]) and HAAA1 and not HleuS1))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

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Gene details

Select a gene to view the details available for it

KnownClusterBlast

Similar known gene clusters

No matches found.