GCA_019125915.1 - 2 region(s)

Identified primary metabolite regions

JAHOCQ010000017 (original name was: JAHOCQ010000017.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 8.1	Fumarate2succinate,Pyruvate2acetate-formate	SCFA	19,397	59,038	Pyruvate to acetate-formate E. coli	PFL_acetate	100%

JAHOCQ010000008 (original name was: JAHOCQ010000008.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 50.1	Others_HGD_unassigned	Putative	67,728	90,050

No primary metabolite regions were found in these records:: JAHOCQ010000010 (original name was: JAHOCQ010000010.1); JAHOCQ010000011 (original name was: JAHOCQ010000011.1); JAHOCQ010000012 (original name was: JAHOCQ010000012.1); JAHOCQ010000013 (original name was: JAHOCQ010000013.1); JAHOCQ010000014 (original name was: JAHOCQ010000014.1); JAHOCQ010000015 (original name was: JAHOCQ010000015.1); JAHOCQ010000016 (original name was: JAHOCQ010000016.1); JAHOCQ010000018 (original name was: JAHOCQ010000018.1); JAHOCQ010000019 (original name was: JAHOCQ010000019.1); JAHOCQ010000001 (original name was: JAHOCQ010000001.1); JAHOCQ010000020 (original name was: JAHOCQ010000020.1); JAHOCQ010000021 (original name was: JAHOCQ010000021.1); JAHOCQ010000022 (original name was: JAHOCQ010000022.1); JAHOCQ010000023 (original name was: JAHOCQ010000023.1); JAHOCQ010000024 (original name was: JAHOCQ010000024.1); JAHOCQ010000025 (original name was: JAHOCQ010000025.1); JAHOCQ010000026 (original name was: JAHOCQ010000026.1); JAHOCQ010000027 (original name was: JAHOCQ010000027.1); JAHOCQ010000028 (original name was: JAHOCQ010000028.1); JAHOCQ010000029 (original name was: JAHOCQ010000029.1); JAHOCQ010000002 (original name was: JAHOCQ010000002.1); JAHOCQ010000030 (original name was: JAHOCQ010000030.1); JAHOCQ010000031 (original name was: JAHOCQ010000031.1); JAHOCQ010000032 (original name was: JAHOCQ010000032.1); JAHOCQ010000033 (original name was: JAHOCQ010000033.1); JAHOCQ010000034 (original name was: JAHOCQ010000034.1); JAHOCQ010000035 (original name was: JAHOCQ010000035.1); JAHOCQ010000036 (original name was: JAHOCQ010000036.1); JAHOCQ010000037 (original name was: JAHOCQ010000037.1); JAHOCQ010000038 (original name was: JAHOCQ010000038.1); JAHOCQ010000003 (original name was: JAHOCQ010000003.1); JAHOCQ010000039 (original name was: JAHOCQ010000039.1); JAHOCQ010000040 (original name was: JAHOCQ010000040.1); JAHOCQ010000041 (original name was: JAHOCQ010000041.1); JAHOCQ010000042 (original name was: JAHOCQ010000042.1); JAHOCQ010000043 (original name was: JAHOCQ010000043.1); JAHOCQ010000044 (original name was: JAHOCQ010000044.1); JAHOCQ010000045 (original name was: JAHOCQ010000045.1); JAHOCQ010000046 (original name was: JAHOCQ010000046.1); JAHOCQ010000047 (original name was: JAHOCQ010000047.1); JAHOCQ010000048 (original name was: JAHOCQ010000048.1); JAHOCQ010000004 (original name was: JAHOCQ010000004.1); JAHOCQ010000049 (original name was: JAHOCQ010000049.1); JAHOCQ010000050 (original name was: JAHOCQ010000050.1); JAHOCQ010000051 (original name was: JAHOCQ010000051.1); JAHOCQ010000005 (original name was: JAHOCQ010000005.1); JAHOCQ010000006 (original name was: JAHOCQ010000006.1); JAHOCQ010000007 (original name was: JAHOCQ010000007.1); JAHOCQ010000009 (original name was: JAHOCQ010000009.1)

Compact view

c00008_JAHOCQ0.. - Region 1 - Fumarate2succinate,Pyruvate2acetate-formate

Download region GenBank file

Location: 19,397 - 59,038 nt. (total: 39,642 nt) Show pHMM detection rules used

Fumarate2succinate: (Succ_DH_flav_C and FAD_binding_2 and (Fer2_3 or Fer4_7 or SucD_FumR))
Pyruvate2acetate-formate: ((PFL_acetate1 or PFL_acetate2) and Radical_SAM)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

KnownClusterBlast

Similar known gene clusters

c00050_JAHOCQ0.. - Region 1 - Others_HGD_unassigned

Download region GenBank file

Location: 67,728 - 90,050 nt. (total: 22,323 nt) Show pHMM detection rules used

Region on contig edge.

Others_HGD_unassigned: (minimum(1, [HAAA1, HG2B1, HG2B2, HGD-D, HleuD1, HleuD2, HleuS1, HleuS2, Lactoyl-CoA1, Lactoyl-CoA2]) and minimum(1, [ACP_syn_III, ACP_syn_III_C, AcetylCoA_hyd_C, AcetylCoA_hydro, Acyl-CoA_dh_1, Acyl-CoA_dh_2, AdoHcyase_NAD, AlaDh_PNT_C, BcrAD_BadFG, Biotin_lipoyl, Carboxyl_trans, CoA_trans, CoA_trans_230_acto, CoA_trans_6_Glutaconate, CoA_transf_3, ECH_1, ECH_2, ETF, ETF_alpha, FGGY_C, HCDH, HCDH_N, Hacid_dh, Hacid_dh_C, Mal_decarbox_Al, Peptidase_M22, Peptidase_M23, Thiolase_C, Thiolase_N, ketoacyl-synt]) and not (minimum(2, [AcetylCoA_hyd_C, BcrAD_BadFG, CoA_trans, CoA_trans_230_acto, Mal_decarbox_Al]) and Lactoyl-CoA2 and Lactoyl-CoA1) and not (minimum(4, [ACP_syn_III, ACP_syn_III_C, Acyl-CoA_dh_1, Acyl-CoA_dh_2, AlaDh_PNT_C, BcrAD_BadFG, ECH_1, ECH_2, ETF, ETF_alpha, HCDH, HCDH_N, Hacid_dh, Hacid_dh_C, IlvN, NAD_Gly3P_dh_N, Thiolase_C, Thiolase_N, ketoacyl-synt]) and HAAA1 and not HleuS1))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

KnownClusterBlast

Similar known gene clusters

No matches found.