GCA_019126195.1 - 2 region(s)

Identified primary metabolite regions

JAHOCJ010000016 (original name was: JAHOCJ010000016.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 7.1	Fumarate2succinate,Pyruvate2acetate-formate	SCFA	19,397	59,038	Pyruvate to acetate-formate E. coli	PFL_acetate	100%

JAHOCJ010000008 (original name was: JAHOCJ010000008.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 49.1	Others_HGD_unassigned	Putative	67,726	90,048

No primary metabolite regions were found in these records:: JAHOCJ010000010 (original name was: JAHOCJ010000010.1); JAHOCJ010000011 (original name was: JAHOCJ010000011.1); JAHOCJ010000012 (original name was: JAHOCJ010000012.1); JAHOCJ010000013 (original name was: JAHOCJ010000013.1); JAHOCJ010000014 (original name was: JAHOCJ010000014.1); JAHOCJ010000015 (original name was: JAHOCJ010000015.1); JAHOCJ010000017 (original name was: JAHOCJ010000017.1); JAHOCJ010000018 (original name was: JAHOCJ010000018.1); JAHOCJ010000019 (original name was: JAHOCJ010000019.1); JAHOCJ010000001 (original name was: JAHOCJ010000001.1); JAHOCJ010000020 (original name was: JAHOCJ010000020.1); JAHOCJ010000021 (original name was: JAHOCJ010000021.1); JAHOCJ010000022 (original name was: JAHOCJ010000022.1); JAHOCJ010000023 (original name was: JAHOCJ010000023.1); JAHOCJ010000024 (original name was: JAHOCJ010000024.1); JAHOCJ010000025 (original name was: JAHOCJ010000025.1); JAHOCJ010000026 (original name was: JAHOCJ010000026.1); JAHOCJ010000027 (original name was: JAHOCJ010000027.1); JAHOCJ010000028 (original name was: JAHOCJ010000028.1); JAHOCJ010000029 (original name was: JAHOCJ010000029.1); JAHOCJ010000002 (original name was: JAHOCJ010000002.1); JAHOCJ010000030 (original name was: JAHOCJ010000030.1); JAHOCJ010000031 (original name was: JAHOCJ010000031.1); JAHOCJ010000032 (original name was: JAHOCJ010000032.1); JAHOCJ010000033 (original name was: JAHOCJ010000033.1); JAHOCJ010000034 (original name was: JAHOCJ010000034.1); JAHOCJ010000035 (original name was: JAHOCJ010000035.1); JAHOCJ010000036 (original name was: JAHOCJ010000036.1); JAHOCJ010000037 (original name was: JAHOCJ010000037.1); JAHOCJ010000038 (original name was: JAHOCJ010000038.1); JAHOCJ010000003 (original name was: JAHOCJ010000003.1); JAHOCJ010000039 (original name was: JAHOCJ010000039.1); JAHOCJ010000040 (original name was: JAHOCJ010000040.1); JAHOCJ010000041 (original name was: JAHOCJ010000041.1); JAHOCJ010000042 (original name was: JAHOCJ010000042.1); JAHOCJ010000043 (original name was: JAHOCJ010000043.1); JAHOCJ010000044 (original name was: JAHOCJ010000044.1); JAHOCJ010000045 (original name was: JAHOCJ010000045.1); JAHOCJ010000046 (original name was: JAHOCJ010000046.1); JAHOCJ010000047 (original name was: JAHOCJ010000047.1); JAHOCJ010000048 (original name was: JAHOCJ010000048.1); JAHOCJ010000004 (original name was: JAHOCJ010000004.1); JAHOCJ010000049 (original name was: JAHOCJ010000049.1); JAHOCJ010000050 (original name was: JAHOCJ010000050.1); JAHOCJ010000005 (original name was: JAHOCJ010000005.1); JAHOCJ010000006 (original name was: JAHOCJ010000006.1); JAHOCJ010000007 (original name was: JAHOCJ010000007.1); JAHOCJ010000009 (original name was: JAHOCJ010000009.1)

Compact view

c00007_JAHOCJ0.. - Region 1 - Fumarate2succinate,Pyruvate2acetate-formate

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Location: 19,397 - 59,038 nt. (total: 39,642 nt) Show pHMM detection rules used

Fumarate2succinate: (Succ_DH_flav_C and FAD_binding_2 and (Fer2_3 or Fer4_7 or SucD_FumR))
Pyruvate2acetate-formate: ((PFL_acetate1 or PFL_acetate2) and Radical_SAM)

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core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

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Gene details

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KnownClusterBlast

Similar known gene clusters

c00049_JAHOCJ0.. - Region 1 - Others_HGD_unassigned

Download region GenBank file

Location: 67,726 - 90,048 nt. (total: 22,323 nt) Show pHMM detection rules used

Region on contig edge.

Others_HGD_unassigned: (minimum(1, [HAAA1, HG2B1, HG2B2, HGD-D, HleuD1, HleuD2, HleuS1, HleuS2, Lactoyl-CoA1, Lactoyl-CoA2]) and minimum(1, [ACP_syn_III, ACP_syn_III_C, AcetylCoA_hyd_C, AcetylCoA_hydro, Acyl-CoA_dh_1, Acyl-CoA_dh_2, AdoHcyase_NAD, AlaDh_PNT_C, BcrAD_BadFG, Biotin_lipoyl, Carboxyl_trans, CoA_trans, CoA_trans_230_acto, CoA_trans_6_Glutaconate, CoA_transf_3, ECH_1, ECH_2, ETF, ETF_alpha, FGGY_C, HCDH, HCDH_N, Hacid_dh, Hacid_dh_C, Mal_decarbox_Al, Peptidase_M22, Peptidase_M23, Thiolase_C, Thiolase_N, ketoacyl-synt]) and not (minimum(2, [AcetylCoA_hyd_C, BcrAD_BadFG, CoA_trans, CoA_trans_230_acto, Mal_decarbox_Al]) and Lactoyl-CoA2 and Lactoyl-CoA1) and not (minimum(4, [ACP_syn_III, ACP_syn_III_C, Acyl-CoA_dh_1, Acyl-CoA_dh_2, AlaDh_PNT_C, BcrAD_BadFG, ECH_1, ECH_2, ETF, ETF_alpha, HCDH, HCDH_N, Hacid_dh, Hacid_dh_C, IlvN, NAD_Gly3P_dh_N, Thiolase_C, Thiolase_N, ketoacyl-synt]) and HAAA1 and not HleuS1))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

KnownClusterBlast

Similar known gene clusters

No matches found.