GCA_019321805.1 - 6 region(s) - antiSMASH results

Identified secondary metabolite regions using strictness 'relaxed'

CP074419.1

Region	Type	From	To	Most similar known cluster		Similarity
Region 1.1	T3PKS	1,008,625	1,049,794
Region 1.2	terpene	2,045,487	2,066,368
Region 1.3	cyclic-lactone-autoinducer	2,303,594	2,324,299
Region 1.4	RiPP-like	2,737,704	2,749,854
Region 1.5	NRPS,NRPS-like	2,872,948	2,931,317	cryptophycin-327	NRP + Polyketide	25%

CP074421.1

Region	Type	From	To	Most similar known cluster		Similarity
Region 3.1	LAP	16,139	38,162

Region	Type	From	To	Most similar known cluster	Similarity
Region 1.1	T3PKS	1,008,625	1,049,794
Region 1.2	terpene	2,045,487	2,066,368
Region 1.3	cyclic-lactone-autoinducer	2,303,594	2,324,299
Region 1.4	RiPP-like	2,737,704	2,749,854
Region 1.5	NRPS,NRPS-like	2,872,948	2,931,317	cryptophycin-327	NRP + Polyketide	25%
Region 3.1	LAP	16,139	38,162

Compact view

CP074419.1 - Region 1 - T3PKS

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Location: 1,008,625 - 1,049,794 nt. (total: 41,170 nt) Show pHMM detection rules used

T3PKS: (Chal_sti_synt_C or Chal_sti_synt_N)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

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KnownClusterBlast

Similar known gene clusters

No matches found.

CP074419.1 - Region 2 - terpene

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Location: 2,045,487 - 2,066,368 nt. (total: 20,882 nt) Show pHMM detection rules used

terpene: (Terpene_synth or Terpene_synth_C or phytoene_synt or Lycopene_cycl or terpene_cyclase or NapT7 or fung_ggpps or fung_ggpps2 or trichodiene_synth or TRI5)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

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KnownClusterBlast

Similar known gene clusters

No matches found.

CP074419.1 - Region 3 - cyclic-lactone-autoinducer

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Location: 2,303,594 - 2,324,299 nt. (total: 20,706 nt) Show pHMM detection rules used

cyclic-lactone-autoinducer: (TIGR04223 or AgrB)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

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KnownClusterBlast

Similar known gene clusters

No matches found.

CP074419.1 - Region 4 - RiPP-like

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Location: 2,737,704 - 2,749,854 nt. (total: 12,151 nt) Show pHMM detection rules used

RiPP-like: (strepbact or Antimicrobial14 or Bacteriocin_IId or BacteriocIIc_cy or Bacteriocin_II or Bacteriocin_IIi or Lactococcin or Antimicrobial17 or Lactococcin_972 or Bacteriocin_IIc or LcnG-beta or Cloacin or Linocin_M18 or TIGR03651 or TIGR03693 or TIGR03601 or TIGR03795 or TIGR03975 or DUF692 or TIGR01193)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

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KnownClusterBlast

Similar known gene clusters

No matches found.

CP074419.1 - Region 5 - NRPS,NRPS-like

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Location: 2,872,948 - 2,931,317 nt. (total: 58,370 nt) Show pHMM detection rules used

NRPS: cds(Condensation and (AMP-binding or A-OX))
NRPS-like: cds((PP-binding or NAD_binding_4) and (AMP-binding or A-OX))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

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NRPS/PKS domains

KnownClusterBlast

Detailed domain annotation

Selected features only

Show module domains

Similar known gene clusters

NRPS/PKS products

NRPS/PKS monomers

Predicted core structure(s)

For candidate cluster 5, location 2872947 - 2931317:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (X) + (X - X) + (X)

Direct lookup in NORINE database: strict or relaxed

For candidate cluster 6, location 2872947 - 2920523:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (X) + (X - X) + (X)

Direct lookup in NORINE database: strict or relaxed

For candidate cluster 7, location 2889649 - 2931317:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (X) + (X - X) + (X)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS monomer predictions

ctg1_2760

Search NORINE for peptide: strict or relaxed

AMP-binding (8..195): X

NRPSPredictor2: (unknown)

SVM prediction details:

Predicted physicochemical class:: N/A
Large clusters prediction:: N/A
Small clusters prediction:: N/A
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: sVt------K
Nearest Stachelhaus code:: ser
Stachelhaus code match:: 20% (weak)

ctg1_2761

Search NORINE for peptide: strict or relaxed

AMP-binding (809..1065): X

NRPSPredictor2: glu, gln

SVM prediction details:

Predicted physicochemical class:: hydrophilic
Large clusters prediction:: asp, asn, glu, gln, aad
Small clusters prediction:: glu, gln
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: DshgYGk--K
Nearest Stachelhaus code:: ile
Stachelhaus code match:: 40% (weak)

ctg1_2762

Search NORINE for peptide: strict or relaxed

AMP-binding (714..1080): X

NRPSPredictor2: gly, ala, val, leu, ile, abu, iva

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: gly, ala, val, leu, ile, abu, iva
Small clusters prediction:: N/A
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: DVLiVAaViK
Nearest Stachelhaus code:: pro
Stachelhaus code match:: 70% (weak)

ctg1_2765

Search NORINE for peptide: strict or relaxed

AMP-binding (0..173): X

NRPSPredictor2: (unknown)

SVM prediction details:

Predicted physicochemical class:: N/A
Large clusters prediction:: N/A
Small clusters prediction:: N/A
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: ----FSLIDK
Nearest Stachelhaus code:: ser
Stachelhaus code match:: 60% (weak)

ctg1_2768

Search NORINE for peptide: strict or relaxed

AMP-binding (0..207): X

NRPSPredictor2: hydrophilic

SVM prediction details:

Predicted physicochemical class:: hydrophilic
Large clusters prediction:: N/A
Small clusters prediction:: N/A
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: DItQmGi--K
Nearest Stachelhaus code:: gly
Stachelhaus code match:: 50% (weak)

ctg1_2774

Search NORINE for peptide: strict or relaxed

AMP-binding (11..374): X

NRPSPredictor2: (unknown)

SVM prediction details:

Predicted physicochemical class:: N/A
Large clusters prediction:: N/A
Small clusters prediction:: N/A
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: vvynTAvaCK
Nearest Stachelhaus code:: his
Stachelhaus code match:: 40% (weak)

CP074421.1 - Region 1 - LAP

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Location: 16,139 - 38,162 nt. (total: 22,024 nt) Show pHMM detection rules used

LAP: ((((goadsporin_like or PF00881 or TIGR03605) and (YcaO or TIGR03882 or TIGR03604)) or TIGR03603 or TIGR03602) and not cyanobactin_synth)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

Select a gene to view the details available for it

KnownClusterBlast

Similar known gene clusters

No matches found.