GCA_019449815.1 - 7 region(s) - antiSMASH results

Identified secondary metabolite regions using strictness 'relaxed'

JAHBRO010000012 (original name was: JAHBRO010000012.1)

Region	Type	From	To	Most similar known cluster		Similarity
Region 4.1	RaS-RiPP	37,792	61,018

JAHBRO010000017 (original name was: JAHBRO010000017.1)

Region	Type	From	To	Most similar known cluster		Similarity
Region 9.1	RaS-RiPP	38,003	60,427	streptide	RiPP	100%

JAHBRO010000019 (original name was: JAHBRO010000019.1)

Region	Type	From	To	Most similar known cluster		Similarity
Region 11.1	RiPP-like	1	13,281

JAHBRO010000002 (original name was: JAHBRO010000002.1)

Region	Type	From	To	Most similar known cluster		Similarity
Region 12.1	lanthipeptide-class-i	22,949	47,002

JAHBRO010000023 (original name was: JAHBRO010000023.1)

Region	Type	From	To	Most similar known cluster		Similarity
Region 16.1	lanthipeptide-class-iv	21,235	43,394

JAHBRO010000003 (original name was: JAHBRO010000003.1)

Region	Type	From	To	Most similar known cluster		Similarity
Region 19.1	NRPS-like	115,950	158,841	asukamycin	Polyketide:Type II	4%

JAHBRO010000005 (original name was: JAHBRO010000005.1)

Region	Type	From	To	Most similar known cluster		Similarity
Region 21.1	RRE-containing	7,662	28,795

Region	Type	From	To	Most similar known cluster	Similarity
Region 4.1	RaS-RiPP	37,792	61,018
Region 9.1	RaS-RiPP	38,003	60,427	streptide	RiPP	100%
Region 11.1	RiPP-like	1	13,281
Region 12.1	lanthipeptide-class-i	22,949	47,002
Region 16.1	lanthipeptide-class-iv	21,235	43,394
Region 19.1	NRPS-like	115,950	158,841	asukamycin	Polyketide:Type II	4%
Region 21.1	RRE-containing	7,662	28,795

No secondary metabolite regions were found in these records:: JAHBRO010000001 (original name was: JAHBRO010000001.1); JAHBRO010000010 (original name was: JAHBRO010000010.1); JAHBRO010000011 (original name was: JAHBRO010000011.1); JAHBRO010000013 (original name was: JAHBRO010000013.1); JAHBRO010000014 (original name was: JAHBRO010000014.1); JAHBRO010000015 (original name was: JAHBRO010000015.1); JAHBRO010000016 (original name was: JAHBRO010000016.1); JAHBRO010000018 (original name was: JAHBRO010000018.1); JAHBRO010000020 (original name was: JAHBRO010000020.1); JAHBRO010000021 (original name was: JAHBRO010000021.1); JAHBRO010000022 (original name was: JAHBRO010000022.1); JAHBRO010000024 (original name was: JAHBRO010000024.1); JAHBRO010000025 (original name was: JAHBRO010000025.1); JAHBRO010000004 (original name was: JAHBRO010000004.1); JAHBRO010000006 (original name was: JAHBRO010000006.1); JAHBRO010000007 (original name was: JAHBRO010000007.1); JAHBRO010000008 (original name was: JAHBRO010000008.1); JAHBRO010000009 (original name was: JAHBRO010000009.1)

Compact view

c00004_JAHBRO0.. - Region 1 - RaS-RiPP

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Location: 37,792 - 61,018 nt. (total: 23,227 nt) Show pHMM detection rules used

RaS-RiPP: (PF04055 and TIGR01716)

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core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

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Gene details

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KnownClusterBlast

Similar known gene clusters

No matches found.

c00009_JAHBRO0.. - Region 1 - RaS-RiPP

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Location: 38,003 - 60,427 nt. (total: 22,425 nt) Show pHMM detection rules used

RaS-RiPP: (PF04055 and TIGR01716)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

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KnownClusterBlast

Similar known gene clusters

c00011_JAHBRO0.. - Region 1 - RiPP-like

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Location: 1 - 13,281 nt. (total: 13,281 nt) Show pHMM detection rules used

Region on contig edge.

RiPP-like: (strepbact or Antimicrobial14 or Bacteriocin_IId or BacteriocIIc_cy or Bacteriocin_II or Bacteriocin_IIi or Lactococcin or Antimicrobial17 or Lactococcin_972 or Bacteriocin_IIc or LcnG-beta or Cloacin or Linocin_M18 or TIGR03651 or TIGR03693 or TIGR03601 or TIGR03795 or TIGR03975 or DUF692 or TIGR01193)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

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KnownClusterBlast

Similar known gene clusters

No matches found.

c00012_JAHBRO0.. - Region 1 - lanthipeptide-class-i

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Location: 22,949 - 47,002 nt. (total: 24,054 nt) Show pHMM detection rules used

lanthipeptide-class-i: ((LANC_like and (Lant_dehydr_N or Lant_dehydr_C)) and not (YcaO or TIGR03882))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Lanthipeptides

KnownClusterBlast

Lanthipeptide predictions

Lanthipeptides - No core peptides found.

Similar known gene clusters

No matches found.

Lanthipeptides

Core peptide predictions

No core peptides found.

c00016_JAHBRO0.. - Region 1 - lanthipeptide-class-iv

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Location: 21,235 - 43,394 nt. (total: 22,160 nt) Show pHMM detection rules used

lanthipeptide-class-iv: (cds(LANC_like and Pkinase) and not micKC)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

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Lanthipeptides

KnownClusterBlast

Lanthipeptide predictions

Lanthipeptides - No core peptides found.

Similar known gene clusters

No matches found.

Lanthipeptides

Core peptide predictions

No core peptides found.

c00019_JAHBRO0.. - Region 1 - NRPS-like

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Location: 115,950 - 158,841 nt. (total: 42,892 nt) Show pHMM detection rules used

NRPS-like: cds((PP-binding or NAD_binding_4) and (AMP-binding or A-OX))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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NRPS/PKS domains

KnownClusterBlast

Detailed domain annotation

Selected features only

Show module domains

Similar known gene clusters

c00021_JAHBRO0.. - Region 1 - RRE-containing

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Location: 7,662 - 28,795 nt. (total: 21,134 nt) Show pHMM detection rules used

RRE-containing: minimum(1, [Bottromycin_Methyltransferase_RRE, Cyanobactin_D_RRE, Cytolysin_C_RRE, Goadsporin_CD_RRE, Heterocycloanthracin_C_RRE, Lanthipeptide_LanB_RRE, Lasso_Fused_RRE, Mycofactocin_RRE, NHLP_CD_RRE, Other_Sactipeptide_rSAM_RRE, Pantocin_Microcin_RRE, Plantazolicin_C_RRE, PlpY_RRE, PqqD_RRE, Proteusin_Epimerase_RRE, Proteusin_Methyltransferase_RRE, Quinohemoprotein_rSAM_RRE, Ranthipeptide_rSAM_RRE, Stand_Alone_Lasso_RRE, Streptide_RRE, Subtilosin_rSAM_RRE, Thiaglutamate_B_RRE, Thiaglutamate_G_RRE, Thiaglutamate_I_RRE, Thiopeptide_F_RRE, Thuricin_rSAM_RRE, Thurincin_rSAM_RRE, Trifolitoxin_RRE])

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

Select a gene to view the details available for it

KnownClusterBlast

Similar known gene clusters

No matches found.