GCA_019449915.1 - 6 region(s) - antiSMASH results

Identified secondary metabolite regions using strictness 'relaxed'

JAHDUO010000012 (original name was: JAHDUO010000012.1)

Region	Type	From	To	Most similar known cluster		Similarity
Region 4.1	RaS-RiPP	42,402	65,627

JAHDUO010000002 (original name was: JAHDUO010000002.1)

Region	Type	From	To	Most similar known cluster		Similarity
Region 12.1	lanthipeptide-class-i	40,458	59,932

JAHDUO010000020 (original name was: JAHDUO010000020.1)

Region	Type	From	To	Most similar known cluster		Similarity
Region 13.1	RiPP-like	1	11,526

JAHDUO010000021 (original name was: JAHDUO010000021.1)

Region	Type	From	To	Most similar known cluster		Similarity
Region 14.1	lanthipeptide-class-iv,RaS-RiPP	97,464	124,252

JAHDUO010000006 (original name was: JAHDUO010000006.1)

Region	Type	From	To	Most similar known cluster		Similarity
Region 23.1	NRPS-like	22,729	65,620	asukamycin	Polyketide:Type II	4%

JAHDUO010000008 (original name was: JAHDUO010000008.1)

Region	Type	From	To	Most similar known cluster		Similarity
Region 25.1	RRE-containing	143,826	164,959

Region	Type	From	To	Most similar known cluster	Similarity
Region 4.1	RaS-RiPP	42,402	65,627
Region 12.1	lanthipeptide-class-i	40,458	59,932
Region 13.1	RiPP-like	1	11,526
Region 14.1	lanthipeptide-class-iv,RaS-RiPP	97,464	124,252
Region 23.1	NRPS-like	22,729	65,620	asukamycin	Polyketide:Type II	4%
Region 25.1	RRE-containing	143,826	164,959

No secondary metabolite regions were found in these records:: JAHDUO010000001 (original name was: JAHDUO010000001.1); JAHDUO010000010 (original name was: JAHDUO010000010.1); JAHDUO010000011 (original name was: JAHDUO010000011.1); JAHDUO010000013 (original name was: JAHDUO010000013.1); JAHDUO010000014 (original name was: JAHDUO010000014.1); JAHDUO010000015 (original name was: JAHDUO010000015.1); JAHDUO010000016 (original name was: JAHDUO010000016.1); JAHDUO010000017 (original name was: JAHDUO010000017.1); JAHDUO010000018 (original name was: JAHDUO010000018.1); JAHDUO010000019 (original name was: JAHDUO010000019.1); JAHDUO010000022 (original name was: JAHDUO010000022.1); JAHDUO010000023 (original name was: JAHDUO010000023.1); JAHDUO010000024 (original name was: JAHDUO010000024.1); JAHDUO010000025 (original name was: JAHDUO010000025.1); JAHDUO010000026 (original name was: JAHDUO010000026.1); JAHDUO010000003 (original name was: JAHDUO010000003.1); JAHDUO010000004 (original name was: JAHDUO010000004.1); JAHDUO010000005 (original name was: JAHDUO010000005.1); JAHDUO010000007 (original name was: JAHDUO010000007.1); JAHDUO010000009 (original name was: JAHDUO010000009.1)

Compact view

c00004_JAHDUO0.. - Region 1 - RaS-RiPP

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Location: 42,402 - 65,627 nt. (total: 23,226 nt) Show pHMM detection rules used

RaS-RiPP: (PF04055 and TIGR01716)

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core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

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KnownClusterBlast

Similar known gene clusters

No matches found.

c00012_JAHDUO0.. - Region 1 - lanthipeptide-class-i

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Location: 40,458 - 59,932 nt. (total: 19,475 nt) Show pHMM detection rules used

Region on contig edge.

lanthipeptide-class-i: ((LANC_like and (Lant_dehydr_N or Lant_dehydr_C)) and not (YcaO or TIGR03882))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

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Lanthipeptides

KnownClusterBlast

Lanthipeptide predictions

Lanthipeptides - No core peptides found.

Similar known gene clusters

No matches found.

Lanthipeptides

Core peptide predictions

No core peptides found.

c00013_JAHDUO0.. - Region 1 - RiPP-like

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Location: 1 - 11,526 nt. (total: 11,526 nt) Show pHMM detection rules used

Region on contig edge.

RiPP-like: (strepbact or Antimicrobial14 or Bacteriocin_IId or BacteriocIIc_cy or Bacteriocin_II or Bacteriocin_IIi or Lactococcin or Antimicrobial17 or Lactococcin_972 or Bacteriocin_IIc or LcnG-beta or Cloacin or Linocin_M18 or TIGR03651 or TIGR03693 or TIGR03601 or TIGR03795 or TIGR03975 or DUF692 or TIGR01193)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

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KnownClusterBlast

Similar known gene clusters

No matches found.

c00014_JAHDUO0.. - Region 1 - RaS-RiPP,lanthipeptide-class-iv

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Location: 97,464 - 124,252 nt. (total: 26,789 nt) Show pHMM detection rules used

lanthipeptide-class-iv: (cds(LANC_like and Pkinase) and not micKC)
RaS-RiPP: (PF04055 and TIGR01716)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

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Lanthipeptides

KnownClusterBlast

Lanthipeptide predictions

Lanthipeptides - No core peptides found.

Similar known gene clusters

No matches found.

Lanthipeptides

Core peptide predictions

No core peptides found.

c00023_JAHDUO0.. - Region 1 - NRPS-like

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Location: 22,729 - 65,620 nt. (total: 42,892 nt) Show pHMM detection rules used

NRPS-like: cds((PP-binding or NAD_binding_4) and (AMP-binding or A-OX))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

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NRPS/PKS domains

KnownClusterBlast

Detailed domain annotation

Selected features only

Show module domains

Similar known gene clusters

c00025_JAHDUO0.. - Region 1 - RRE-containing

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Location: 143,826 - 164,959 nt. (total: 21,134 nt) Show pHMM detection rules used

RRE-containing: minimum(1, [Bottromycin_Methyltransferase_RRE, Cyanobactin_D_RRE, Cytolysin_C_RRE, Goadsporin_CD_RRE, Heterocycloanthracin_C_RRE, Lanthipeptide_LanB_RRE, Lasso_Fused_RRE, Mycofactocin_RRE, NHLP_CD_RRE, Other_Sactipeptide_rSAM_RRE, Pantocin_Microcin_RRE, Plantazolicin_C_RRE, PlpY_RRE, PqqD_RRE, Proteusin_Epimerase_RRE, Proteusin_Methyltransferase_RRE, Quinohemoprotein_rSAM_RRE, Ranthipeptide_rSAM_RRE, Stand_Alone_Lasso_RRE, Streptide_RRE, Subtilosin_rSAM_RRE, Thiaglutamate_B_RRE, Thiaglutamate_G_RRE, Thiaglutamate_I_RRE, Thiopeptide_F_RRE, Thuricin_rSAM_RRE, Thurincin_rSAM_RRE, Trifolitoxin_RRE])

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

KnownClusterBlast

Similar known gene clusters

No matches found.