GCA_019449965.1 - 9 region(s) - antiSMASH results

Identified secondary metabolite regions using strictness 'relaxed'

JAHDUS010000011 (original name was: JAHDUS010000011.1)

Region	Type	From	To	Most similar known cluster		Similarity
Region 3.1	lanthipeptide-class-ii	1	14,052	macedocin	RiPP:Lanthipeptide	64%

JAHDUS010000013 (original name was: JAHDUS010000013.1)

Region	Type	From	To	Most similar known cluster		Similarity
Region 5.1	RRE-containing	347	20,838

JAHDUS010000024 (original name was: JAHDUS010000024.1)

Region	Type	From	To	Most similar known cluster		Similarity
Region 17.1	RiPP-like	1	2,567

JAHDUS010000026 (original name was: JAHDUS010000026.1)

Region	Type	From	To	Most similar known cluster		Similarity
Region 19.1	RaS-RiPP	38,880	56,862

JAHDUS010000040 (original name was: JAHDUS010000040.1)

Region	Type	From	To	Most similar known cluster		Similarity
Region 35.1	RaS-RiPP	78,757	101,181	streptide	RiPP	100%

JAHDUS010000046 (original name was: JAHDUS010000046.1)

Region	Type	From	To	Most similar known cluster		Similarity
Region 41.1	RiPP-like	1	1,133

JAHDUS010000047 (original name was: JAHDUS010000047.1)

Region	Type	From	To	Most similar known cluster		Similarity
Region 42.1	RiPP-like	1	15,912

JAHDUS010000005 (original name was: JAHDUS010000005.1)

Region	Type	From	To	Most similar known cluster		Similarity
Region 45.1	NRPS-like	1	35,431	asukamycin	Polyketide:Type II	4%

JAHDUS010000055 (original name was: JAHDUS010000055.1)

Region	Type	From	To	Most similar known cluster		Similarity
Region 51.1	lanthipeptide-class-iv	1	13,659

No secondary metabolite regions were found in these records:: JAHDUS010000001 (original name was: JAHDUS010000001.1); JAHDUS010000010 (original name was: JAHDUS010000010.1); JAHDUS010000012 (original name was: JAHDUS010000012.1); JAHDUS010000014 (original name was: JAHDUS010000014.1); JAHDUS010000015 (original name was: JAHDUS010000015.1); JAHDUS010000016 (original name was: JAHDUS010000016.1); JAHDUS010000017 (original name was: JAHDUS010000017.1); JAHDUS010000018 (original name was: JAHDUS010000018.1); JAHDUS010000019 (original name was: JAHDUS010000019.1); JAHDUS010000002 (original name was: JAHDUS010000002.1); JAHDUS010000020 (original name was: JAHDUS010000020.1); JAHDUS010000021 (original name was: JAHDUS010000021.1); JAHDUS010000022 (original name was: JAHDUS010000022.1); JAHDUS010000023 (original name was: JAHDUS010000023.1); JAHDUS010000025 (original name was: JAHDUS010000025.1); JAHDUS010000027 (original name was: JAHDUS010000027.1); JAHDUS010000028 (original name was: JAHDUS010000028.1); JAHDUS010000029 (original name was: JAHDUS010000029.1); JAHDUS010000003 (original name was: JAHDUS010000003.1); JAHDUS010000030 (original name was: JAHDUS010000030.1); JAHDUS010000031 (original name was: JAHDUS010000031.1); JAHDUS010000032 (original name was: JAHDUS010000032.1); JAHDUS010000033 (original name was: JAHDUS010000033.1); JAHDUS010000034 (original name was: JAHDUS010000034.1); JAHDUS010000035 (original name was: JAHDUS010000035.1); JAHDUS010000036 (original name was: JAHDUS010000036.1); JAHDUS010000037 (original name was: JAHDUS010000037.1); JAHDUS010000038 (original name was: JAHDUS010000038.1); JAHDUS010000039 (original name was: JAHDUS010000039.1); JAHDUS010000004 (original name was: JAHDUS010000004.1); JAHDUS010000041 (original name was: JAHDUS010000041.1); JAHDUS010000042 (original name was: JAHDUS010000042.1); JAHDUS010000043 (original name was: JAHDUS010000043.1); JAHDUS010000044 (original name was: JAHDUS010000044.1); JAHDUS010000045 (original name was: JAHDUS010000045.1); JAHDUS010000048 (original name was: JAHDUS010000048.1); JAHDUS010000049 (original name was: JAHDUS010000049.1); JAHDUS010000050 (original name was: JAHDUS010000050.1); JAHDUS010000051 (original name was: JAHDUS010000051.1); JAHDUS010000052 (original name was: JAHDUS010000052.1); JAHDUS010000053 (original name was: JAHDUS010000053.1); JAHDUS010000054 (original name was: JAHDUS010000054.1); JAHDUS010000056 (original name was: JAHDUS010000056.1); JAHDUS010000057 (original name was: JAHDUS010000057.1); JAHDUS010000058 (original name was: JAHDUS010000058.1); JAHDUS010000059 (original name was: JAHDUS010000059.1); JAHDUS010000006 (original name was: JAHDUS010000006.1); JAHDUS010000060 (original name was: JAHDUS010000060.1); JAHDUS010000061 (original name was: JAHDUS010000061.1); JAHDUS010000062 (original name was: JAHDUS010000062.1); JAHDUS010000063 (original name was: JAHDUS010000063.1); JAHDUS010000064 (original name was: JAHDUS010000064.1); JAHDUS010000065 (original name was: JAHDUS010000065.1); JAHDUS010000066 (original name was: JAHDUS010000066.1); JAHDUS010000067 (original name was: JAHDUS010000067.1); JAHDUS010000007 (original name was: JAHDUS010000007.1); JAHDUS010000008 (original name was: JAHDUS010000008.1); JAHDUS010000009 (original name was: JAHDUS010000009.1)

Compact view

c00003_JAHDUS0.. - Region 1 - lanthipeptide-class-ii

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Location: 1 - 14,052 nt. (total: 14,052 nt) Show pHMM detection rules used

Region on contig edge.

lanthipeptide-class-ii: cds(LANC_like and DUF4135)

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core biosynthetic genes

additional biosynthetic genes

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Gene details

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Lanthipeptides

KnownClusterBlast

Lanthipeptide predictions

Lanthipeptide(s) for ctg3_5 - Putative Class II

ctg3_2 leader / core peptide: MEKETTIIESIQEVSLEELDQIIGA - GKNGVFKDhbIDhaHECHLNDhbWAFLADhbCCDha
ctg3_3 leader / core peptide: MEKETTIIESIQEVSLEELDQIIGA - GKNGVFKDhbIDhaHECHLNDhbWAFLADhbCCDha
ctg3_4 leader / core peptide: MKNNNKICQDALESLQELKLEEVDELLGG - AGHGVNDhbIDhaAECRWNDhaLQAIFDhaCC
allorf_09277_09384 leader / core peptide: VGLSYLSSNLVRYAVIGA - KIIDhaYKIEWFDhaICHNHK
allorf_11735_11809 leader / core peptide: MKSKYSLLEAIIYT - DhaKICIGLQDF

Legend:

Dha: Didehydroalanine
Dhb: Didehydrobutyrine

Similar known gene clusters

Lanthipeptides

Core peptide predictions

ctg3_2 - Class II

Cleavage pHMM score: 5.20

RODEO score: 0

Monoisotopic mass: 2776.3 Da

Molecular weight: 2778.2 Da

Number of bridges: 3

Alternative weights: (assuming N unmodified Ser/Thr residues); 2796.2 Da N = 1; 2814.2 Da N = 2

ctg3_3 - Class II

Cleavage pHMM score: 5.20

RODEO score: 0

Monoisotopic mass: 2776.3 Da

Molecular weight: 2778.2 Da

Number of bridges: 3

Alternative weights: (assuming N unmodified Ser/Thr residues); 2796.2 Da N = 1; 2814.2 Da N = 2

ctg3_4 - Class II

Cleavage pHMM score: 0.40

RODEO score: 0

Monoisotopic mass: 2494.2 Da

Molecular weight: 2495.8 Da

Number of bridges: 3

Alternative weights: (assuming N unmodified Ser/Thr residues); 2513.8 Da N = 1

allorf_09277_09384 - Class II

Cleavage pHMM score: -4.70

RODEO score: 0

Monoisotopic mass: 2109.1 Da

Molecular weight: 2110.5 Da

Number of bridges: 1

Alternative weights: (assuming N unmodified Ser/Thr residues); 2128.5 Da N = 1

allorf_11735_11809 - Class II

Cleavage pHMM score: -6.40

RODEO score: 0

Monoisotopic mass: 1104.6 Da

Molecular weight: 1105.3 Da

Number of bridges: 1

c00005_JAHDUS0.. - Region 1 - RRE-containing

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Location: 347 - 20,838 nt. (total: 20,492 nt) Show pHMM detection rules used

RRE-containing: minimum(1, [Bottromycin_Methyltransferase_RRE, Cyanobactin_D_RRE, Cytolysin_C_RRE, Goadsporin_CD_RRE, Heterocycloanthracin_C_RRE, Lanthipeptide_LanB_RRE, Lasso_Fused_RRE, Mycofactocin_RRE, NHLP_CD_RRE, Other_Sactipeptide_rSAM_RRE, Pantocin_Microcin_RRE, Plantazolicin_C_RRE, PlpY_RRE, PqqD_RRE, Proteusin_Epimerase_RRE, Proteusin_Methyltransferase_RRE, Quinohemoprotein_rSAM_RRE, Ranthipeptide_rSAM_RRE, Stand_Alone_Lasso_RRE, Streptide_RRE, Subtilosin_rSAM_RRE, Thiaglutamate_B_RRE, Thiaglutamate_G_RRE, Thiaglutamate_I_RRE, Thiopeptide_F_RRE, Thuricin_rSAM_RRE, Thurincin_rSAM_RRE, Trifolitoxin_RRE])

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

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KnownClusterBlast

Similar known gene clusters

No matches found.

c00017_JAHDUS0.. - Region 1 - RiPP-like

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Location: 1 - 2,567 nt. (total: 2,567 nt) Show pHMM detection rules used

Region on contig edge.

RiPP-like: (strepbact or Antimicrobial14 or Bacteriocin_IId or BacteriocIIc_cy or Bacteriocin_II or Bacteriocin_IIi or Lactococcin or Antimicrobial17 or Lactococcin_972 or Bacteriocin_IIc or LcnG-beta or Cloacin or Linocin_M18 or TIGR03651 or TIGR03693 or TIGR03601 or TIGR03795 or TIGR03975 or DUF692 or TIGR01193)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

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KnownClusterBlast

Similar known gene clusters

No matches found.

c00019_JAHDUS0.. - Region 1 - RaS-RiPP

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Location: 38,880 - 56,862 nt. (total: 17,983 nt) Show pHMM detection rules used

Region on contig edge.

RaS-RiPP: (PF04055 and TIGR01716)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

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KnownClusterBlast

Similar known gene clusters

No matches found.

c00035_JAHDUS0.. - Region 1 - RaS-RiPP

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Location: 78,757 - 101,181 nt. (total: 22,425 nt) Show pHMM detection rules used

RaS-RiPP: (PF04055 and TIGR01716)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

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KnownClusterBlast

Similar known gene clusters

c00041_JAHDUS0.. - Region 1 - RiPP-like

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Location: 1 - 1,133 nt. (total: 1,133 nt) Show pHMM detection rules used

Region on contig edge.

RiPP-like: (strepbact or Antimicrobial14 or Bacteriocin_IId or BacteriocIIc_cy or Bacteriocin_II or Bacteriocin_IIi or Lactococcin or Antimicrobial17 or Lactococcin_972 or Bacteriocin_IIc or LcnG-beta or Cloacin or Linocin_M18 or TIGR03651 or TIGR03693 or TIGR03601 or TIGR03795 or TIGR03975 or DUF692 or TIGR01193)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

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KnownClusterBlast

Similar known gene clusters

No matches found.

c00042_JAHDUS0.. - Region 1 - RiPP-like

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Location: 1 - 15,912 nt. (total: 15,912 nt) Show pHMM detection rules used

Region on contig edge.

RiPP-like: (strepbact or Antimicrobial14 or Bacteriocin_IId or BacteriocIIc_cy or Bacteriocin_II or Bacteriocin_IIi or Lactococcin or Antimicrobial17 or Lactococcin_972 or Bacteriocin_IIc or LcnG-beta or Cloacin or Linocin_M18 or TIGR03651 or TIGR03693 or TIGR03601 or TIGR03795 or TIGR03975 or DUF692 or TIGR01193)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

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KnownClusterBlast

Similar known gene clusters

No matches found.

c00045_JAHDUS0.. - Region 1 - NRPS-like

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Location: 1 - 35,431 nt. (total: 35,431 nt) Show pHMM detection rules used

Region on contig edge.

NRPS-like: cds((PP-binding or NAD_binding_4) and (AMP-binding or A-OX))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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NRPS/PKS domains

KnownClusterBlast

Detailed domain annotation

Selected features only

Show module domains

Similar known gene clusters

c00051_JAHDUS0.. - Region 1 - lanthipeptide-class-iv

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Location: 1 - 13,659 nt. (total: 13,659 nt) Show pHMM detection rules used

Region on contig edge.

lanthipeptide-class-iv: (cds(LANC_like and Pkinase) and not micKC)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

Select a gene to view the details available for it

Lanthipeptides

KnownClusterBlast

Lanthipeptide predictions

Lanthipeptides - No core peptides found.

Similar known gene clusters

No matches found.

Lanthipeptides

Core peptide predictions

No core peptides found.