GCA_019450095.1 - 6 region(s) - antiSMASH results

Identified secondary metabolite regions using strictness 'relaxed'

JAHRBD010000014 (original name was: JAHRBD010000014.1)

Region	Type	From	To	Most similar known cluster		Similarity
Region 6.1	RRE-containing	4,746	25,870

JAHRBD010000020 (original name was: JAHRBD010000020.1)

Region	Type	From	To	Most similar known cluster		Similarity
Region 13.1	RaS-RiPP	39,337	62,562

JAHRBD010000023 (original name was: JAHRBD010000023.1)

Region	Type	From	To	Most similar known cluster		Similarity
Region 16.1	RaS-RiPP	1	17,683	streptide	RiPP	100%

JAHRBD010000025 (original name was: JAHRBD010000025.1)

Region	Type	From	To	Most similar known cluster		Similarity
Region 18.1	RiPP-like	68,749	87,696

JAHRBD010000028 (original name was: JAHRBD010000028.1)

Region	Type	From	To	Most similar known cluster		Similarity
Region 21.1	lanthipeptide-class-iv	40,474	62,633

JAHRBD010000007 (original name was: JAHRBD010000007.1)

Region	Type	From	To	Most similar known cluster		Similarity
Region 31.1	NRPS-like	115,136	158,027	asukamycin	Polyketide:Type II	4%

Region	Type	From	To	Most similar known cluster	Similarity
Region 6.1	RRE-containing	4,746	25,870
Region 13.1	RaS-RiPP	39,337	62,562
Region 16.1	RaS-RiPP	1	17,683	streptide	RiPP	100%
Region 18.1	RiPP-like	68,749	87,696
Region 21.1	lanthipeptide-class-iv	40,474	62,633
Region 31.1	NRPS-like	115,136	158,027	asukamycin	Polyketide:Type II	4%

No secondary metabolite regions were found in these records:: JAHRBD010000001 (original name was: JAHRBD010000001.1); JAHRBD010000010 (original name was: JAHRBD010000010.1); JAHRBD010000011 (original name was: JAHRBD010000011.1); JAHRBD010000012 (original name was: JAHRBD010000012.1); JAHRBD010000013 (original name was: JAHRBD010000013.1); JAHRBD010000015 (original name was: JAHRBD010000015.1); JAHRBD010000016 (original name was: JAHRBD010000016.1); JAHRBD010000017 (original name was: JAHRBD010000017.1); JAHRBD010000018 (original name was: JAHRBD010000018.1); JAHRBD010000019 (original name was: JAHRBD010000019.1); JAHRBD010000002 (original name was: JAHRBD010000002.1); JAHRBD010000021 (original name was: JAHRBD010000021.1); JAHRBD010000022 (original name was: JAHRBD010000022.1); JAHRBD010000024 (original name was: JAHRBD010000024.1); JAHRBD010000026 (original name was: JAHRBD010000026.1); JAHRBD010000027 (original name was: JAHRBD010000027.1); JAHRBD010000029 (original name was: JAHRBD010000029.1); JAHRBD010000003 (original name was: JAHRBD010000003.1); JAHRBD010000030 (original name was: JAHRBD010000030.1); JAHRBD010000031 (original name was: JAHRBD010000031.1); JAHRBD010000032 (original name was: JAHRBD010000032.1); JAHRBD010000033 (original name was: JAHRBD010000033.1); JAHRBD010000004 (original name was: JAHRBD010000004.1); JAHRBD010000005 (original name was: JAHRBD010000005.1); JAHRBD010000006 (original name was: JAHRBD010000006.1); JAHRBD010000008 (original name was: JAHRBD010000008.1); JAHRBD010000009 (original name was: JAHRBD010000009.1)

Compact view

c00006_JAHRBD0.. - Region 1 - RRE-containing

Download region GenBank file

Download region SVG

Location: 4,746 - 25,870 nt. (total: 21,125 nt) Show pHMM detection rules used

RRE-containing: minimum(1, [Bottromycin_Methyltransferase_RRE, Cyanobactin_D_RRE, Cytolysin_C_RRE, Goadsporin_CD_RRE, Heterocycloanthracin_C_RRE, Lanthipeptide_LanB_RRE, Lasso_Fused_RRE, Mycofactocin_RRE, NHLP_CD_RRE, Other_Sactipeptide_rSAM_RRE, Pantocin_Microcin_RRE, Plantazolicin_C_RRE, PlpY_RRE, PqqD_RRE, Proteusin_Epimerase_RRE, Proteusin_Methyltransferase_RRE, Quinohemoprotein_rSAM_RRE, Ranthipeptide_rSAM_RRE, Stand_Alone_Lasso_RRE, Streptide_RRE, Subtilosin_rSAM_RRE, Thiaglutamate_B_RRE, Thiaglutamate_G_RRE, Thiaglutamate_I_RRE, Thiopeptide_F_RRE, Thuricin_rSAM_RRE, Thurincin_rSAM_RRE, Trifolitoxin_RRE])

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

KnownClusterBlast

Similar known gene clusters

No matches found.

c00013_JAHRBD0.. - Region 1 - RaS-RiPP

Download region GenBank file

Download region SVG

Location: 39,337 - 62,562 nt. (total: 23,226 nt) Show pHMM detection rules used

RaS-RiPP: (PF04055 and TIGR01716)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

KnownClusterBlast

Similar known gene clusters

No matches found.

c00016_JAHRBD0.. - Region 1 - RaS-RiPP

Download region GenBank file

Download region SVG

Location: 1 - 17,683 nt. (total: 17,683 nt) Show pHMM detection rules used

Region on contig edge.

RaS-RiPP: (PF04055 and TIGR01716)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

KnownClusterBlast

Similar known gene clusters

c00018_JAHRBD0.. - Region 1 - RiPP-like

Download region GenBank file

Download region SVG

Location: 68,749 - 87,696 nt. (total: 18,948 nt) Show pHMM detection rules used

RiPP-like: (strepbact or Antimicrobial14 or Bacteriocin_IId or BacteriocIIc_cy or Bacteriocin_II or Bacteriocin_IIi or Lactococcin or Antimicrobial17 or Lactococcin_972 or Bacteriocin_IIc or LcnG-beta or Cloacin or Linocin_M18 or TIGR03651 or TIGR03693 or TIGR03601 or TIGR03795 or TIGR03975 or DUF692 or TIGR01193)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

KnownClusterBlast

Similar known gene clusters

No matches found.

c00021_JAHRBD0.. - Region 1 - lanthipeptide-class-iv

Download region GenBank file

Download region SVG

Location: 40,474 - 62,633 nt. (total: 22,160 nt) Show pHMM detection rules used

lanthipeptide-class-iv: (cds(LANC_like and Pkinase) and not micKC)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

Lanthipeptides

KnownClusterBlast

Lanthipeptide predictions

Lanthipeptides - No core peptides found.

Similar known gene clusters

No matches found.

Lanthipeptides

Core peptide predictions

No core peptides found.

c00031_JAHRBD0.. - Region 1 - NRPS-like

Download region GenBank file

Download region SVG

Location: 115,136 - 158,027 nt. (total: 42,892 nt) Show pHMM detection rules used

NRPS-like: cds((PP-binding or NAD_binding_4) and (AMP-binding or A-OX))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

NRPS/PKS domains

KnownClusterBlast

Detailed domain annotation

Selected features only

Show module domains

Similar known gene clusters