GCA_019459645.1 - 8 region(s)

Identified primary metabolite regions

JAHXSB010000001 (original name was: JAHXSB010000001.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 1.1	fatty_acids-unassigned	Putative	68,450	118,405

JAHXSB010000014 (original name was: JAHXSB010000014.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 6.1	TPP_AA_metabolism	Putative	1	20,007

JAHXSB010000020 (original name was: JAHXSB010000020.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 13.1	hydroxybenzoate2phenol	Aromatic	2,471	24,473	hydroxybenzoate2phenol K. pneumoniae	PHE	100%

JAHXSB010000025 (original name was: JAHXSB010000025.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 18.1	histidine2glutamate_hutHGIU_operon	Other	41,844	67,256	Histidine to glutamate K. pneumoniae	GLU	60%

JAHXSB010000003 (original name was: JAHXSB010000003.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 22.1	Putrescine2spermidine,Nitrate_reductase	E-MGC	148,417	185,948	Nitrate reductase E. coli	NIR	60%

JAHXSB010000031 (original name was: JAHXSB010000031.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 23.1	fatty_acids-unassigned	Putative	30,464	50,061	Acetate to butyrate C. sporogenes	BUT	33%

JAHXSB010000034 (original name was: JAHXSB010000034.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 26.1	Fumarate2succinate	SCFA	30,435	43,721	Acetate to butyrate C. sporogenes	BUT	33%

JAHXSB010000005 (original name was: JAHXSB010000005.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 42.1	fatty_acids-unassigned	Putative	170,969	194,187	Acetate to butyrate C. sporogenes	BUT	50%

Region	Type	Class	From	To	Most similar known cluster	Similarity
Region 1.1	fatty_acids-unassigned	Putative	68,450	118,405
Region 6.1	TPP_AA_metabolism	Putative	1	20,007
Region 13.1	hydroxybenzoate2phenol	Aromatic	2,471	24,473	hydroxybenzoate2phenol K. pneumoniae	PHE	100%
Region 18.1	histidine2glutamate_hutHGIU_operon	Other	41,844	67,256	Histidine to glutamate K. pneumoniae	GLU	60%
Region 22.1	Putrescine2spermidine,Nitrate_reductase	E-MGC	148,417	185,948	Nitrate reductase E. coli	NIR	60%
Region 23.1	fatty_acids-unassigned	Putative	30,464	50,061	Acetate to butyrate C. sporogenes	BUT	33%
Region 26.1	Fumarate2succinate	SCFA	30,435	43,721	Acetate to butyrate C. sporogenes	BUT	33%
Region 42.1	fatty_acids-unassigned	Putative	170,969	194,187	Acetate to butyrate C. sporogenes	BUT	50%

No primary metabolite regions were found in these records:: JAHXSB010000010 (original name was: JAHXSB010000010.1); JAHXSB010000011 (original name was: JAHXSB010000011.1); JAHXSB010000012 (original name was: JAHXSB010000012.1); JAHXSB010000013 (original name was: JAHXSB010000013.1); JAHXSB010000015 (original name was: JAHXSB010000015.1); JAHXSB010000016 (original name was: JAHXSB010000016.1); JAHXSB010000017 (original name was: JAHXSB010000017.1); JAHXSB010000018 (original name was: JAHXSB010000018.1); JAHXSB010000019 (original name was: JAHXSB010000019.1); JAHXSB010000002 (original name was: JAHXSB010000002.1); JAHXSB010000021 (original name was: JAHXSB010000021.1); JAHXSB010000022 (original name was: JAHXSB010000022.1); JAHXSB010000023 (original name was: JAHXSB010000023.1); JAHXSB010000024 (original name was: JAHXSB010000024.1); JAHXSB010000026 (original name was: JAHXSB010000026.1); JAHXSB010000027 (original name was: JAHXSB010000027.1); JAHXSB010000028 (original name was: JAHXSB010000028.1); JAHXSB010000032 (original name was: JAHXSB010000032.1); JAHXSB010000033 (original name was: JAHXSB010000033.1); JAHXSB010000036 (original name was: JAHXSB010000036.1); JAHXSB010000037 (original name was: JAHXSB010000037.1); JAHXSB010000038 (original name was: JAHXSB010000038.1); JAHXSB010000039 (original name was: JAHXSB010000039.1); JAHXSB010000004 (original name was: JAHXSB010000004.1); JAHXSB010000040 (original name was: JAHXSB010000040.1); JAHXSB010000041 (original name was: JAHXSB010000041.1); JAHXSB010000042 (original name was: JAHXSB010000042.1); JAHXSB010000043 (original name was: JAHXSB010000043.1); JAHXSB010000044 (original name was: JAHXSB010000044.1); JAHXSB010000045 (original name was: JAHXSB010000045.1); JAHXSB010000046 (original name was: JAHXSB010000046.1); JAHXSB010000047 (original name was: JAHXSB010000047.1); JAHXSB010000048 (original name was: JAHXSB010000048.1); JAHXSB010000049 (original name was: JAHXSB010000049.1); JAHXSB010000050 (original name was: JAHXSB010000050.1); JAHXSB010000051 (original name was: JAHXSB010000051.1); JAHXSB010000052 (original name was: JAHXSB010000052.1); JAHXSB010000053 (original name was: JAHXSB010000053.1); JAHXSB010000055 (original name was: JAHXSB010000055.1); JAHXSB010000056 (original name was: JAHXSB010000056.1); JAHXSB010000057 (original name was: JAHXSB010000057.1); JAHXSB010000058 (original name was: JAHXSB010000058.1); JAHXSB010000059 (original name was: JAHXSB010000059.1); JAHXSB010000006 (original name was: JAHXSB010000006.1); JAHXSB010000060 (original name was: JAHXSB010000060.1); JAHXSB010000061 (original name was: JAHXSB010000061.1); JAHXSB010000063 (original name was: JAHXSB010000063.1); JAHXSB010000064 (original name was: JAHXSB010000064.1); JAHXSB010000066 (original name was: JAHXSB010000066.1); JAHXSB010000067 (original name was: JAHXSB010000067.1); JAHXSB010000007 (original name was: JAHXSB010000007.1); JAHXSB010000070 (original name was: JAHXSB010000070.1); JAHXSB010000008 (original name was: JAHXSB010000008.1); JAHXSB010000009 (original name was: JAHXSB010000009.1)

Compact view

c00001_JAHXSB0.. - Region 1 - fatty_acids-unassigned

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Location: 68,450 - 118,405 nt. (total: 49,956 nt) Show pHMM detection rules used

fatty_acids-unassigned: (not (EC1_2-faecali or baiH or baiCD or ECH1_Enoyl_CoA_DH1 or ECH1_Enoyl_CoA_DH2 or ECH1_Enoyl_CoA_DH3 or ECH1_Enoyl_CoA_DH4 or POR or POR_N or PFOR_II) and minimum(4, [AcetylCoA_hyd_C, Acyl-CoA_dh_1, Acyl-CoA_dh_2, EC1_2-faecali, ECH1_8_CARC, ECH_1, ECH_2, HBT, HCDH, HCDH_N, Thiolase_C, Thiolase_N, ketoacyl-synt]))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

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Gene details

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KnownClusterBlast

Similar known gene clusters

No matches found.

c00006_JAHXSB0.. - Region 1 - TPP_AA_metabolism

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Location: 1 - 20,007 nt. (total: 20,007 nt) Show pHMM detection rules used

Region on contig edge.

TPP_AA_metabolism: (TPP_enzyme_C and not (PFL-like or PFL_6_pcresol or PFL_9_tma or Gly_radical or Gly_430_pcre or Gly_8-9_TMA or PFL_acetate1 or PFL_acetate2 or Gly_radical_scatole or PFL_proline or PFL_toluene) and minimum(2, [ALS_ss_C, AlaDh_PNT_C, Arginase, BKACE, BcrAD_BadFG, Beta_elim_lyase, CPSase_L_D2, Cys_Met_Meta_PP, ELFV_dehydrog, GRDB, Glu_syn_central, Glu_synthase, Gly_reductase, HAAA1, HG2B1, HG2B2, HGD-D, HleuD1, HleuD2, HleuS1, HleuS2, Homoserine_dh, ILVD_EDD, IlvC, Lactoyl-CoA1, Lactoyl-CoA2, Lyase_aromatic, MAAL_C, OKR_DC_1_5_lysine, OKR_DC_1_5_ornithine, OKR_DC_1_7_arginine, OKR_DC_1_C, OTCace, PALP, Proline_reductase, Sacchrp_dh_C, TPL, Thr_dehydrat_C, TnaA, Urocanase]) and not (POR or POR_N or PFOR_II))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

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Gene details

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KnownClusterBlast

Similar known gene clusters

No matches found.

c00013_JAHXSB0.. - Region 1 - hydroxybenzoate2phenol

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Location: 2,471 - 24,473 nt. (total: 22,003 nt) Show pHMM detection rules used

hydroxybenzoate2phenol: (Flavoprotein and Phea_decarb and not ubi_syn)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

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KnownClusterBlast

Similar known gene clusters

c00018_JAHXSB0.. - Region 1 - histidine2glutamate_hutHGIU_operon

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Location: 41,844 - 67,256 nt. (total: 25,413 nt) Show pHMM detection rules used

histidine2glutamate_hutHGIU_operon: (minimum(3, [Amidohydro_1, Amidohydro_3, Arginase, FGase, Urocanase]) and Lyase_aromatic and Urocanase_C)

Legend:

core biosynthetic genes

additional biosynthetic genes

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regulatory genes

resistance genes

encapsulation genes

electron transport genes

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KnownClusterBlast

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c00022_JAHXSB0.. - Region 1 - Nitrate_reductase,Putrescine2spermidine

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Location: 148,417 - 185,948 nt. (total: 37,532 nt) Show pHMM detection rules used

Putrescine2spermidine: (minimum(2, [AdoMet_dc, Spermine_synt_N, Spermine_synth]) or (Orn_DAP_Arg_deC and Sacchrp_dh_C))
Nitrate_reductase: (Nitr_red_bet_C and Nitrate_red_del and Nitrate_red_gam and Molybdopterin and minimum(2, [Fer4_11, Molybdopterin, Molydop_binding, Nitr_red_alph_N]))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

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Gene details

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KnownClusterBlast

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c00023_JAHXSB0.. - Region 1 - fatty_acids-unassigned

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Location: 30,464 - 50,061 nt. (total: 19,598 nt) Show pHMM detection rules used

Region on contig edge.

fatty_acids-unassigned: (not (EC1_2-faecali or baiH or baiCD or ECH1_Enoyl_CoA_DH1 or ECH1_Enoyl_CoA_DH2 or ECH1_Enoyl_CoA_DH3 or ECH1_Enoyl_CoA_DH4 or POR or POR_N or PFOR_II) and minimum(4, [AcetylCoA_hyd_C, Acyl-CoA_dh_1, Acyl-CoA_dh_2, EC1_2-faecali, ECH1_8_CARC, ECH_1, ECH_2, HBT, HCDH, HCDH_N, Thiolase_C, Thiolase_N, ketoacyl-synt]))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

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Gene details

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KnownClusterBlast

Similar known gene clusters

c00026_JAHXSB0.. - Region 1 - Fumarate2succinate

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Location: 30,435 - 43,721 nt. (total: 13,287 nt) Show pHMM detection rules used

Region on contig edge.

Fumarate2succinate: (Succ_DH_flav_C and FAD_binding_2 and (Fer2_3 or Fer4_7 or SucD_FumR))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

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Gene details

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c00042_JAHXSB0.. - Region 1 - fatty_acids-unassigned

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Location: 170,969 - 194,187 nt. (total: 23,219 nt) Show pHMM detection rules used

fatty_acids-unassigned: (not (EC1_2-faecali or baiH or baiCD or ECH1_Enoyl_CoA_DH1 or ECH1_Enoyl_CoA_DH2 or ECH1_Enoyl_CoA_DH3 or ECH1_Enoyl_CoA_DH4 or POR or POR_N or PFOR_II) and minimum(4, [AcetylCoA_hyd_C, Acyl-CoA_dh_1, Acyl-CoA_dh_2, EC1_2-faecali, ECH1_8_CARC, ECH_1, ECH_2, HBT, HCDH, HCDH_N, Thiolase_C, Thiolase_N, ketoacyl-synt]))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

reset view

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Gene details

Select a gene to view the details available for it

KnownClusterBlast

Similar known gene clusters