GCA_019583555.1 - 9 region(s)

Identified primary metabolite regions

VBRP01000003.1

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 3.1	fatty_acids-unassigned	Putative	117,516	142,948	Acetate to butyrate C. sporogenes	BUT	33%

VBRP01000025.1

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 22.1	Nitrate_reductase	E-MGC	7,647	33,770	Nitrate reductase E. coli	NIR	60%

VBRP01000032.1

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 27.1	histidine2glutamate_hutHGIU_operon	Other	78,056	96,625	Histidine to glutamate K. pneumoniae	GLU	60%

VBRP01000039.1

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 34.1	hydroxybenzoate2phenol	Aromatic	190,454	212,492	hydroxybenzoate2phenol K. pneumoniae	PHE	100%

VBRP01000046.1

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 41.1	TPP_AA_metabolism	Putative	1	13,936

VBRP01000053.1

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 48.1	fatty_acids-unassigned	Putative	74,994	98,230	Acetate to butyrate C. sporogenes	BUT	50%

VBRP01000056.1

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 51.1	fatty_acids-unassigned	Putative	51,308	99,539

VBRP01000064.1

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 59.1	Fumarate2succinate	SCFA	1	21,986	Acetate to butyrate C. sporogenes	BUT	33%

VBRP01000065.1

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 60.1	Putrescine2spermidine	Aliphatic_amine	183,235	195,298	Arginine degradation C. sticklandii	ARG	22%

No primary metabolite regions were found in these records:: VBRP01000001.1; VBRP01000002.1; VBRP01000004.1; VBRP01000005.1; VBRP01000006.1; VBRP01000007.1; VBRP01000008.1; VBRP01000010.1; VBRP01000013.1; VBRP01000014.1; VBRP01000015.1; VBRP01000016.1; VBRP01000017.1; VBRP01000018.1; VBRP01000019.1; VBRP01000020.1; VBRP01000021.1; VBRP01000022.1; VBRP01000023.1; VBRP01000024.1; VBRP01000027.1; VBRP01000028.1; VBRP01000029.1; VBRP01000031.1; VBRP01000033.1; VBRP01000034.1; VBRP01000035.1; VBRP01000036.1; VBRP01000037.1; VBRP01000038.1; VBRP01000040.1; VBRP01000041.1; VBRP01000042.1; VBRP01000043.1; VBRP01000044.1; VBRP01000045.1; VBRP01000047.1; VBRP01000048.1; VBRP01000049.1; VBRP01000050.1; VBRP01000051.1; VBRP01000052.1; VBRP01000054.1; VBRP01000055.1; VBRP01000057.1; VBRP01000058.1; VBRP01000059.1; VBRP01000060.1; VBRP01000061.1; VBRP01000062.1; VBRP01000063.1; VBRP01000067.1; VBRP01000068.1; VBRP01000069.1; VBRP01000070.1; VBRP01000071.1; VBRP01000072.1; VBRP01000073.1; VBRP01000074.1; VBRP01000075.1

Compact view

VBRP01000003.1 - Region 1 - fatty_acids-unassigned

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Location: 117,516 - 142,948 nt. (total: 25,433 nt) Show pHMM detection rules used

fatty_acids-unassigned: (not (EC1_2-faecali or baiH or baiCD or ECH1_Enoyl_CoA_DH1 or ECH1_Enoyl_CoA_DH2 or ECH1_Enoyl_CoA_DH3 or ECH1_Enoyl_CoA_DH4 or POR or POR_N or PFOR_II) and minimum(4, [AcetylCoA_hyd_C, Acyl-CoA_dh_1, Acyl-CoA_dh_2, EC1_2-faecali, ECH1_8_CARC, ECH_1, ECH_2, HBT, HCDH, HCDH_N, Thiolase_C, Thiolase_N, ketoacyl-synt]))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

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Gene details

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KnownClusterBlast

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VBRP01000025.1 - Region 1 - Nitrate_reductase

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Location: 7,647 - 33,770 nt. (total: 26,124 nt) Show pHMM detection rules used

Nitrate_reductase: (Nitr_red_bet_C and Nitrate_red_del and Nitrate_red_gam and Molybdopterin and minimum(2, [Fer4_11, Molybdopterin, Molydop_binding, Nitr_red_alph_N]))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

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KnownClusterBlast

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VBRP01000032.1 - Region 1 - histidine2glutamate_hutHGIU_operon

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Location: 78,056 - 96,625 nt. (total: 18,570 nt) Show pHMM detection rules used

Region on contig edge.

histidine2glutamate_hutHGIU_operon: (minimum(3, [Amidohydro_1, Amidohydro_3, Arginase, FGase, Urocanase]) and Lyase_aromatic and Urocanase_C)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

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Gene details

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KnownClusterBlast

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VBRP01000039.1 - Region 1 - hydroxybenzoate2phenol

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Location: 190,454 - 212,492 nt. (total: 22,039 nt) Show pHMM detection rules used

hydroxybenzoate2phenol: (Flavoprotein and Phea_decarb and not ubi_syn)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

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Gene details

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KnownClusterBlast

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VBRP01000046.1 - Region 1 - TPP_AA_metabolism

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Location: 1 - 13,936 nt. (total: 13,936 nt) Show pHMM detection rules used

Region on contig edge.

TPP_AA_metabolism: (TPP_enzyme_C and not (PFL-like or PFL_6_pcresol or PFL_9_tma or Gly_radical or Gly_430_pcre or Gly_8-9_TMA or PFL_acetate1 or PFL_acetate2 or Gly_radical_scatole or PFL_proline or PFL_toluene) and minimum(2, [ALS_ss_C, AlaDh_PNT_C, Arginase, BKACE, BcrAD_BadFG, Beta_elim_lyase, CPSase_L_D2, Cys_Met_Meta_PP, ELFV_dehydrog, GRDB, Glu_syn_central, Glu_synthase, Gly_reductase, HAAA1, HG2B1, HG2B2, HGD-D, HleuD1, HleuD2, HleuS1, HleuS2, Homoserine_dh, ILVD_EDD, IlvC, Lactoyl-CoA1, Lactoyl-CoA2, Lyase_aromatic, MAAL_C, OKR_DC_1_5_lysine, OKR_DC_1_5_ornithine, OKR_DC_1_7_arginine, OKR_DC_1_C, OTCace, PALP, Proline_reductase, Sacchrp_dh_C, TPL, Thr_dehydrat_C, TnaA, Urocanase]) and not (POR or POR_N or PFOR_II))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

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Gene details

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KnownClusterBlast

Similar known gene clusters

No matches found.

VBRP01000053.1 - Region 1 - fatty_acids-unassigned

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Location: 74,994 - 98,230 nt. (total: 23,237 nt) Show pHMM detection rules used

fatty_acids-unassigned: (not (EC1_2-faecali or baiH or baiCD or ECH1_Enoyl_CoA_DH1 or ECH1_Enoyl_CoA_DH2 or ECH1_Enoyl_CoA_DH3 or ECH1_Enoyl_CoA_DH4 or POR or POR_N or PFOR_II) and minimum(4, [AcetylCoA_hyd_C, Acyl-CoA_dh_1, Acyl-CoA_dh_2, EC1_2-faecali, ECH1_8_CARC, ECH_1, ECH_2, HBT, HCDH, HCDH_N, Thiolase_C, Thiolase_N, ketoacyl-synt]))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

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Gene details

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KnownClusterBlast

Similar known gene clusters

VBRP01000056.1 - Region 1 - fatty_acids-unassigned

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Location: 51,308 - 99,539 nt. (total: 48,232 nt) Show pHMM detection rules used

Region on contig edge.

fatty_acids-unassigned: (not (EC1_2-faecali or baiH or baiCD or ECH1_Enoyl_CoA_DH1 or ECH1_Enoyl_CoA_DH2 or ECH1_Enoyl_CoA_DH3 or ECH1_Enoyl_CoA_DH4 or POR or POR_N or PFOR_II) and minimum(4, [AcetylCoA_hyd_C, Acyl-CoA_dh_1, Acyl-CoA_dh_2, EC1_2-faecali, ECH1_8_CARC, ECH_1, ECH_2, HBT, HCDH, HCDH_N, Thiolase_C, Thiolase_N, ketoacyl-synt]))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

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Gene details

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KnownClusterBlast

Similar known gene clusters

No matches found.

VBRP01000064.1 - Region 1 - Fumarate2succinate

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Location: 1 - 21,986 nt. (total: 21,986 nt) Show pHMM detection rules used

Region on contig edge.

Fumarate2succinate: (Succ_DH_flav_C and FAD_binding_2 and (Fer2_3 or Fer4_7 or SucD_FumR))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

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Gene details

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KnownClusterBlast

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VBRP01000065.1 - Region 1 - Putrescine2spermidine

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Location: 183,235 - 195,298 nt. (total: 12,064 nt) Show pHMM detection rules used

Region on contig edge.

Putrescine2spermidine: (minimum(2, [AdoMet_dc, Spermine_synt_N, Spermine_synth]) or (Orn_DAP_Arg_deC and Sacchrp_dh_C))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

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Gene details

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KnownClusterBlast

Similar known gene clusters