GCA_019641395.1 - 3 region(s)

Identified primary metabolite regions

JAIFOL010000001 (original name was: JAIFOL010000001.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 11.1	TPP_fatty_acids	Putative	309,929	335,630

JAIFOL010000002 (original name was: JAIFOL010000002.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 22.1	Pyruvate2acetate-formate	SCFA	95,080	118,324	Pyruvate to acetate-formate E. coli	PFL_acetate	100%

JAIFOL010000003 (original name was: JAIFOL010000003.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 33.1	TPP_AA_metabolism	Putative	83,785	114,029

Region	Type	Class	From	To	Most similar known cluster	Similarity
Region 11.1	TPP_fatty_acids	Putative	309,929	335,630
Region 22.1	Pyruvate2acetate-formate	SCFA	95,080	118,324	Pyruvate to acetate-formate E. coli	PFL_acetate	100%
Region 33.1	TPP_AA_metabolism	Putative	83,785	114,029

No primary metabolite regions were found in these records:: JAIFOL010000010 (original name was: JAIFOL010000010.1); JAIFOL010000011 (original name was: JAIFOL010000011.1); JAIFOL010000012 (original name was: JAIFOL010000012.1); JAIFOL010000013 (original name was: JAIFOL010000013.1); JAIFOL010000014 (original name was: JAIFOL010000014.1); JAIFOL010000015 (original name was: JAIFOL010000015.1); JAIFOL010000016 (original name was: JAIFOL010000016.1); JAIFOL010000017 (original name was: JAIFOL010000017.1); JAIFOL010000018 (original name was: JAIFOL010000018.1); JAIFOL010000019 (original name was: JAIFOL010000019.1); JAIFOL010000020 (original name was: JAIFOL010000020.1); JAIFOL010000021 (original name was: JAIFOL010000021.1); JAIFOL010000022 (original name was: JAIFOL010000022.1); JAIFOL010000023 (original name was: JAIFOL010000023.1); JAIFOL010000024 (original name was: JAIFOL010000024.1); JAIFOL010000025 (original name was: JAIFOL010000025.1); JAIFOL010000026 (original name was: JAIFOL010000026.1); JAIFOL010000027 (original name was: JAIFOL010000027.1); JAIFOL010000028 (original name was: JAIFOL010000028.1); JAIFOL010000029 (original name was: JAIFOL010000029.1); JAIFOL010000030 (original name was: JAIFOL010000030.1); JAIFOL010000031 (original name was: JAIFOL010000031.1); JAIFOL010000032 (original name was: JAIFOL010000032.1); JAIFOL010000033 (original name was: JAIFOL010000033.1); JAIFOL010000034 (original name was: JAIFOL010000034.1); JAIFOL010000035 (original name was: JAIFOL010000035.1); JAIFOL010000036 (original name was: JAIFOL010000036.1); JAIFOL010000037 (original name was: JAIFOL010000037.1); JAIFOL010000038 (original name was: JAIFOL010000038.1); JAIFOL010000039 (original name was: JAIFOL010000039.1); JAIFOL010000040 (original name was: JAIFOL010000040.1); JAIFOL010000041 (original name was: JAIFOL010000041.1); JAIFOL010000042 (original name was: JAIFOL010000042.1); JAIFOL010000043 (original name was: JAIFOL010000043.1); JAIFOL010000044 (original name was: JAIFOL010000044.1); JAIFOL010000045 (original name was: JAIFOL010000045.1); JAIFOL010000046 (original name was: JAIFOL010000046.1); JAIFOL010000047 (original name was: JAIFOL010000047.1); JAIFOL010000048 (original name was: JAIFOL010000048.1); JAIFOL010000049 (original name was: JAIFOL010000049.1); JAIFOL010000004 (original name was: JAIFOL010000004.1); JAIFOL010000050 (original name was: JAIFOL010000050.1); JAIFOL010000051 (original name was: JAIFOL010000051.1); JAIFOL010000052 (original name was: JAIFOL010000052.1); JAIFOL010000053 (original name was: JAIFOL010000053.1); JAIFOL010000054 (original name was: JAIFOL010000054.1); JAIFOL010000055 (original name was: JAIFOL010000055.1); JAIFOL010000056 (original name was: JAIFOL010000056.1); JAIFOL010000057 (original name was: JAIFOL010000057.1); JAIFOL010000058 (original name was: JAIFOL010000058.1); JAIFOL010000059 (original name was: JAIFOL010000059.1); JAIFOL010000005 (original name was: JAIFOL010000005.1); JAIFOL010000060 (original name was: JAIFOL010000060.1); JAIFOL010000061 (original name was: JAIFOL010000061.1); JAIFOL010000062 (original name was: JAIFOL010000062.1); JAIFOL010000063 (original name was: JAIFOL010000063.1); JAIFOL010000064 (original name was: JAIFOL010000064.1); JAIFOL010000065 (original name was: JAIFOL010000065.1); JAIFOL010000066 (original name was: JAIFOL010000066.1); JAIFOL010000067 (original name was: JAIFOL010000067.1); JAIFOL010000068 (original name was: JAIFOL010000068.1); JAIFOL010000069 (original name was: JAIFOL010000069.1); JAIFOL010000006 (original name was: JAIFOL010000006.1); JAIFOL010000070 (original name was: JAIFOL010000070.1); JAIFOL010000071 (original name was: JAIFOL010000071.1); JAIFOL010000072 (original name was: JAIFOL010000072.1); JAIFOL010000073 (original name was: JAIFOL010000073.1); JAIFOL010000074 (original name was: JAIFOL010000074.1); JAIFOL010000075 (original name was: JAIFOL010000075.1); JAIFOL010000076 (original name was: JAIFOL010000076.1); JAIFOL010000077 (original name was: JAIFOL010000077.1); JAIFOL010000078 (original name was: JAIFOL010000078.1); JAIFOL010000079 (original name was: JAIFOL010000079.1); JAIFOL010000007 (original name was: JAIFOL010000007.1); JAIFOL010000080 (original name was: JAIFOL010000080.1); JAIFOL010000081 (original name was: JAIFOL010000081.1); JAIFOL010000082 (original name was: JAIFOL010000082.1); JAIFOL010000083 (original name was: JAIFOL010000083.1); JAIFOL010000084 (original name was: JAIFOL010000084.1); JAIFOL010000085 (original name was: JAIFOL010000085.1); JAIFOL010000086 (original name was: JAIFOL010000086.1); JAIFOL010000087 (original name was: JAIFOL010000087.1); JAIFOL010000088 (original name was: JAIFOL010000088.1); JAIFOL010000008 (original name was: JAIFOL010000008.1); JAIFOL010000009 (original name was: JAIFOL010000009.1)

Compact view

c00011_JAIFOL0.. - Region 1 - TPP_fatty_acids

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Location: 309,929 - 335,630 nt. (total: 25,702 nt) Show pHMM detection rules used

TPP_fatty_acids: (TPP_enzyme_C and (minimum(2, [ACD1_car, ACP_syn_III_C, AcetylCoA_hyd_C, AcetylCoA_hydro, Acyl-CoA_dh_1, Acyl-CoA_dh_2, Butyrate_kinase, CT_Propionyl_CoA1, CT_Propionyl_CoA2, CT_Propionyl_CoA3, Carboxyl_trans, CoA_trans, CoA_trans_230_acto, CoA_trans_2_CAF, CoA_trans_6_Glutaconate, E1_dh, ECH_1, ECH_2, HBT, HBT_2, HCDH, HpaB, Ketoacyl-synt_C, Thiolase_C, Thiolase_N, adh_short, adh_short_C2]) or FA_synthesis) and not (PFL-like or PFL_6_pcresol or PFL_9_tma or Gly_radical or Gly_430_pcre or PFL_acetate1 or PFL_acetate2 or Gly_radical_scatole or PFL_proline or PFL_toluene) and not (POR or POR_N))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

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Gene details

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KnownClusterBlast

Similar known gene clusters

No matches found.

c00022_JAIFOL0.. - Region 1 - Pyruvate2acetate-formate

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Location: 95,080 - 118,324 nt. (total: 23,245 nt) Show pHMM detection rules used

Pyruvate2acetate-formate: ((PFL_acetate1 or PFL_acetate2) and Radical_SAM)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

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Gene details

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KnownClusterBlast

Similar known gene clusters

c00033_JAIFOL0.. - Region 1 - TPP_AA_metabolism

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Location: 83,785 - 114,029 nt. (total: 30,245 nt) Show pHMM detection rules used

Region on contig edge.

TPP_AA_metabolism: (TPP_enzyme_C and not (PFL-like or PFL_6_pcresol or PFL_9_tma or Gly_radical or Gly_430_pcre or Gly_8-9_TMA or PFL_acetate1 or PFL_acetate2 or Gly_radical_scatole or PFL_proline or PFL_toluene) and minimum(2, [ALS_ss_C, AlaDh_PNT_C, Arginase, BKACE, BcrAD_BadFG, Beta_elim_lyase, CPSase_L_D2, Cys_Met_Meta_PP, ELFV_dehydrog, GRDB, Glu_syn_central, Glu_synthase, Gly_reductase, HAAA1, HG2B1, HG2B2, HGD-D, HleuD1, HleuD2, HleuS1, HleuS2, Homoserine_dh, ILVD_EDD, IlvC, Lactoyl-CoA1, Lactoyl-CoA2, Lyase_aromatic, MAAL_C, OKR_DC_1_5_lysine, OKR_DC_1_5_ornithine, OKR_DC_1_7_arginine, OKR_DC_1_C, OTCace, PALP, Proline_reductase, Sacchrp_dh_C, TPL, Thr_dehydrat_C, TnaA, Urocanase]) and not (POR or POR_N or PFOR_II))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

KnownClusterBlast

Similar known gene clusters

No matches found.