GCA_019990845.1 - 4 region(s)

Identified primary metabolite regions

JAIPUO010000007 (original name was: JAIPUO010000007.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 2.1	Pyruvate2acetate-formate	SCFA	7,230	30,480	Pyruvate to acetate-formate E. coli	PFL_acetate	100%

JAIPUO010000054 (original name was: JAIPUO010000054.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 25.1	TPP_AA_metabolism	Putative	1	30,023

JAIPUO010000053 (original name was: JAIPUO010000053.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 34.1	TPP_fatty_acids	Putative	1	21,093

JAIPUO010000045 (original name was: JAIPUO010000045.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 39.1	gallic_acid_met	Aromatic	45,826	58,401	Gallic acid degradation B. sp. KLE	GALL	100%

No primary metabolite regions were found in these records:: JAIPUO010000032 (original name was: JAIPUO010000032.1); JAIPUO010000031 (original name was: JAIPUO010000031.1); JAIPUO010000030 (original name was: JAIPUO010000030.1); JAIPUO010000004 (original name was: JAIPUO010000004.1); JAIPUO010000016 (original name was: JAIPUO010000016.1); JAIPUO010000050 (original name was: JAIPUO010000050.1); JAIPUO010000024 (original name was: JAIPUO010000024.1); JAIPUO010000018 (original name was: JAIPUO010000018.1); JAIPUO010000021 (original name was: JAIPUO010000021.1); JAIPUO010000055 (original name was: JAIPUO010000055.1); JAIPUO010000039 (original name was: JAIPUO010000039.1); JAIPUO010000008 (original name was: JAIPUO010000008.1); JAIPUO010000033 (original name was: JAIPUO010000033.1); JAIPUO010000051 (original name was: JAIPUO010000051.1); JAIPUO010000010 (original name was: JAIPUO010000010.1); JAIPUO010000047 (original name was: JAIPUO010000047.1); JAIPUO010000034 (original name was: JAIPUO010000034.1); JAIPUO010000022 (original name was: JAIPUO010000022.1); JAIPUO010000035 (original name was: JAIPUO010000035.1); JAIPUO010000036 (original name was: JAIPUO010000036.1); JAIPUO010000038 (original name was: JAIPUO010000038.1); JAIPUO010000056 (original name was: JAIPUO010000056.1); JAIPUO010000037 (original name was: JAIPUO010000037.1); JAIPUO010000013 (original name was: JAIPUO010000013.1); JAIPUO010000049 (original name was: JAIPUO010000049.1); JAIPUO010000042 (original name was: JAIPUO010000042.1); JAIPUO010000040 (original name was: JAIPUO010000040.1); JAIPUO010000041 (original name was: JAIPUO010000041.1); JAIPUO010000025 (original name was: JAIPUO010000025.1); JAIPUO010000017 (original name was: JAIPUO010000017.1); JAIPUO010000011 (original name was: JAIPUO010000011.1); JAIPUO010000014 (original name was: JAIPUO010000014.1); JAIPUO010000043 (original name was: JAIPUO010000043.1); JAIPUO010000052 (original name was: JAIPUO010000052.1); JAIPUO010000044 (original name was: JAIPUO010000044.1); JAIPUO010000046 (original name was: JAIPUO010000046.1); JAIPUO010000003 (original name was: JAIPUO010000003.1); JAIPUO010000048 (original name was: JAIPUO010000048.1); JAIPUO010000020 (original name was: JAIPUO010000020.1); JAIPUO010000029 (original name was: JAIPUO010000029.1)

Compact view

c00002_JAIPUO0.. - Region 1 - Pyruvate2acetate-formate

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Location: 7,230 - 30,480 nt. (total: 23,251 nt) Show pHMM detection rules used

Pyruvate2acetate-formate: ((PFL_acetate1 or PFL_acetate2) and Radical_SAM)

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core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

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Gene details

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KnownClusterBlast

Similar known gene clusters

c00025_JAIPUO0.. - Region 1 - TPP_AA_metabolism

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Location: 1 - 30,023 nt. (total: 30,023 nt) Show pHMM detection rules used

Region on contig edge.

TPP_AA_metabolism: (TPP_enzyme_C and not (PFL-like or PFL_6_pcresol or PFL_9_tma or Gly_radical or Gly_430_pcre or Gly_8-9_TMA or PFL_acetate1 or PFL_acetate2 or Gly_radical_scatole or PFL_proline or PFL_toluene) and minimum(2, [ALS_ss_C, AlaDh_PNT_C, Arginase, BKACE, BcrAD_BadFG, Beta_elim_lyase, CPSase_L_D2, Cys_Met_Meta_PP, ELFV_dehydrog, GRDB, Glu_syn_central, Glu_synthase, Gly_reductase, HAAA1, HG2B1, HG2B2, HGD-D, HleuD1, HleuD2, HleuS1, HleuS2, Homoserine_dh, ILVD_EDD, IlvC, Lactoyl-CoA1, Lactoyl-CoA2, Lyase_aromatic, MAAL_C, OKR_DC_1_5_lysine, OKR_DC_1_5_ornithine, OKR_DC_1_7_arginine, OKR_DC_1_C, OTCace, PALP, Proline_reductase, Sacchrp_dh_C, TPL, Thr_dehydrat_C, TnaA, Urocanase]) and not (POR or POR_N or PFOR_II))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

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Gene details

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KnownClusterBlast

Similar known gene clusters

No matches found.

c00034_JAIPUO0.. - Region 1 - TPP_fatty_acids

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Location: 1 - 21,093 nt. (total: 21,093 nt) Show pHMM detection rules used

Region on contig edge.

TPP_fatty_acids: (TPP_enzyme_C and (minimum(2, [ACD1_car, ACP_syn_III_C, AcetylCoA_hyd_C, AcetylCoA_hydro, Acyl-CoA_dh_1, Acyl-CoA_dh_2, Butyrate_kinase, CT_Propionyl_CoA1, CT_Propionyl_CoA2, CT_Propionyl_CoA3, Carboxyl_trans, CoA_trans, CoA_trans_230_acto, CoA_trans_2_CAF, CoA_trans_6_Glutaconate, E1_dh, ECH_1, ECH_2, HBT, HBT_2, HCDH, HpaB, Ketoacyl-synt_C, Thiolase_C, Thiolase_N, adh_short, adh_short_C2]) or FA_synthesis) and not (PFL-like or PFL_6_pcresol or PFL_9_tma or Gly_radical or Gly_430_pcre or PFL_acetate1 or PFL_acetate2 or Gly_radical_scatole or PFL_proline or PFL_toluene) and not (POR or POR_N))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

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Gene details

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KnownClusterBlast

Similar known gene clusters

No matches found.

c00039_JAIPUO0.. - Region 1 - gallic_acid_met

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Location: 45,826 - 58,401 nt. (total: 12,576 nt) Show pHMM detection rules used

Region on contig edge.

gallic_acid_met: (minimum(1, [Flavoprotein, Semialdhyde_dh]) and gallic_acid)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

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Gene details

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KnownClusterBlast

Similar known gene clusters