GCA_020026555.1 - 3 region(s) - antiSMASH results

Identified secondary metabolite regions using strictness 'relaxed'

JAINRO010000001 (original name was: JAINRO010000001.1)

Region	Type	From	To	Most similar known cluster		Similarity
Region 1.1	T3PKS	104,508	145,671

JAINRO010000010 (original name was: JAINRO010000010.1)

Region	Type	From	To	Most similar known cluster		Similarity
Region 10.1	lanthipeptide-class-i	1	22,908	nisin Q	RiPP:Lanthipeptide	63%

JAINRO010000027 (original name was: JAINRO010000027.1)

Region	Type	From	To	Most similar known cluster		Similarity
Region 27.1	RiPP-like	1	9,667	salivaricin CRL1328 α peptide / salivaricin CRL1328 β peptide	RiPP	41%

Region	Type	From	To	Most similar known cluster	Similarity
Region 1.1	T3PKS	104,508	145,671
Region 10.1	lanthipeptide-class-i	1	22,908	nisin Q	RiPP:Lanthipeptide	63%
Region 27.1	RiPP-like	1	9,667	salivaricin CRL1328 α peptide / salivaricin CRL1328 β peptide	RiPP	41%

No secondary metabolite regions were found in these records:: JAINRO010000002 (original name was: JAINRO010000002.1); JAINRO010000003 (original name was: JAINRO010000003.1); JAINRO010000004 (original name was: JAINRO010000004.1); JAINRO010000005 (original name was: JAINRO010000005.1); JAINRO010000006 (original name was: JAINRO010000006.1); JAINRO010000007 (original name was: JAINRO010000007.1); JAINRO010000008 (original name was: JAINRO010000008.1); JAINRO010000009 (original name was: JAINRO010000009.1); JAINRO010000011 (original name was: JAINRO010000011.1); JAINRO010000012 (original name was: JAINRO010000012.1); JAINRO010000013 (original name was: JAINRO010000013.1); JAINRO010000014 (original name was: JAINRO010000014.1); JAINRO010000015 (original name was: JAINRO010000015.1); JAINRO010000016 (original name was: JAINRO010000016.1); JAINRO010000017 (original name was: JAINRO010000017.1); JAINRO010000018 (original name was: JAINRO010000018.1); JAINRO010000019 (original name was: JAINRO010000019.1); JAINRO010000020 (original name was: JAINRO010000020.1); JAINRO010000021 (original name was: JAINRO010000021.1); JAINRO010000022 (original name was: JAINRO010000022.1); JAINRO010000023 (original name was: JAINRO010000023.1); JAINRO010000024 (original name was: JAINRO010000024.1); JAINRO010000025 (original name was: JAINRO010000025.1); JAINRO010000026 (original name was: JAINRO010000026.1); JAINRO010000028 (original name was: JAINRO010000028.1); JAINRO010000029 (original name was: JAINRO010000029.1); JAINRO010000030 (original name was: JAINRO010000030.1); JAINRO010000031 (original name was: JAINRO010000031.1); JAINRO010000032 (original name was: JAINRO010000032.1); JAINRO010000033 (original name was: JAINRO010000033.1); JAINRO010000034 (original name was: JAINRO010000034.1); JAINRO010000035 (original name was: JAINRO010000035.1); JAINRO010000036 (original name was: JAINRO010000036.1); JAINRO010000037 (original name was: JAINRO010000037.1); JAINRO010000038 (original name was: JAINRO010000038.1); JAINRO010000039 (original name was: JAINRO010000039.1); JAINRO010000040 (original name was: JAINRO010000040.1); JAINRO010000041 (original name was: JAINRO010000041.1); JAINRO010000042 (original name was: JAINRO010000042.1); JAINRO010000043 (original name was: JAINRO010000043.1); JAINRO010000044 (original name was: JAINRO010000044.1); JAINRO010000045 (original name was: JAINRO010000045.1); JAINRO010000046 (original name was: JAINRO010000046.1); JAINRO010000047 (original name was: JAINRO010000047.1); JAINRO010000048 (original name was: JAINRO010000048.1); JAINRO010000049 (original name was: JAINRO010000049.1); JAINRO010000050 (original name was: JAINRO010000050.1); JAINRO010000051 (original name was: JAINRO010000051.1); JAINRO010000052 (original name was: JAINRO010000052.1); JAINRO010000053 (original name was: JAINRO010000053.1); JAINRO010000054 (original name was: JAINRO010000054.1); JAINRO010000055 (original name was: JAINRO010000055.1); JAINRO010000056 (original name was: JAINRO010000056.1); JAINRO010000057 (original name was: JAINRO010000057.1); JAINRO010000058 (original name was: JAINRO010000058.1); JAINRO010000059 (original name was: JAINRO010000059.1); JAINRO010000060 (original name was: JAINRO010000060.1); JAINRO010000061 (original name was: JAINRO010000061.1); JAINRO010000062 (original name was: JAINRO010000062.1); JAINRO010000063 (original name was: JAINRO010000063.1)

Compact view

c00001_JAINRO0.. - Region 1 - T3PKS

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Location: 104,508 - 145,671 nt. (total: 41,164 nt) Show pHMM detection rules used

T3PKS: (Chal_sti_synt_C or Chal_sti_synt_N)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

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KnownClusterBlast

Similar known gene clusters

No matches found.

c00010_JAINRO0.. - Region 1 - lanthipeptide-class-i

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Location: 1 - 22,908 nt. (total: 22,908 nt) Show pHMM detection rules used

Region on contig edge.

lanthipeptide-class-i: ((LANC_like and (Lant_dehydr_N or Lant_dehydr_C)) and not (YcaO or TIGR03882))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

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Lanthipeptides

KnownClusterBlast

Lanthipeptide predictions

Lanthipeptide(s) for ctg10_10 - Putative Class I

ctg10_9 leader / core peptide: MSVNDFKLDLVKVSKESTNSNYSVK - IDhbDhaYDhaLCDhbPGCKDhbGALMGCDhbMKDhbADhaCGCHVHIDhaK

Legend:

Dha: Didehydroalanine
Dhb: Didehydrobutyrine

Similar known gene clusters

Lanthipeptides

Core peptide predictions

ctg10_9 - Class I

Cleavage pHMM score: 12.40

RODEO score: 26

Monoisotopic mass: 3326.6 Da

Molecular weight: 3329.0 Da

Number of bridges: 5

Alternative weights: (assuming N unmodified Ser/Thr residues); 3347.0 Da N = 1; 3365.0 Da N = 2; 3383.0 Da N = 3; 3401.1 Da N = 4

c00027_JAINRO0.. - Region 1 - RiPP-like

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Location: 1 - 9,667 nt. (total: 9,667 nt) Show pHMM detection rules used

Region on contig edge.

RiPP-like: (strepbact or Antimicrobial14 or Bacteriocin_IId or BacteriocIIc_cy or Bacteriocin_II or Bacteriocin_IIi or Lactococcin or Antimicrobial17 or Lactococcin_972 or Bacteriocin_IIc or LcnG-beta or Cloacin or Linocin_M18 or TIGR03651 or TIGR03693 or TIGR03601 or TIGR03795 or TIGR03975 or DUF692 or TIGR01193)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

KnownClusterBlast

Similar known gene clusters