GCA_020166055.1 - 5 region(s)

Identified primary metabolite regions

JAIUDR010000012 (original name was: JAIUDR010000012.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 4.1	fatty_acids-unassigned	Putative	88,006	113,438	Acetate to butyrate C. sporogenes	BUT	33%

JAIUDR010000015 (original name was: JAIUDR010000015.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 7.1	Fumarate2succinate,TPP_AA_metabolism	Putative	178,111	223,919	Acetate to butyrate C. sporogenes	BUT	33%

JAIUDR010000027 (original name was: JAIUDR010000027.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 20.1	hydroxybenzoate2phenol	Aromatic	26,145	48,183	hydroxybenzoate2phenol K. pneumoniae	PHE	100%

JAIUDR010000003 (original name was: JAIUDR010000003.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 23.1	fatty_acids-unassigned	Putative	90,153	113,389	Acetate to butyrate C. sporogenes	BUT	50%

JAIUDR010000005 (original name was: JAIUDR010000005.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 42.1	Putrescine2spermidine,Nitrate_reductase	E-MGC	1	42,980	Nitrate reductase E. coli	NIR	60%

No primary metabolite regions were found in these records:: JAIUDR010000001 (original name was: JAIUDR010000001.1); JAIUDR010000010 (original name was: JAIUDR010000010.1); JAIUDR010000011 (original name was: JAIUDR010000011.1); JAIUDR010000013 (original name was: JAIUDR010000013.1); JAIUDR010000014 (original name was: JAIUDR010000014.1); JAIUDR010000016 (original name was: JAIUDR010000016.1); JAIUDR010000017 (original name was: JAIUDR010000017.1); JAIUDR010000018 (original name was: JAIUDR010000018.1); JAIUDR010000019 (original name was: JAIUDR010000019.1); JAIUDR010000002 (original name was: JAIUDR010000002.1); JAIUDR010000020 (original name was: JAIUDR010000020.1); JAIUDR010000021 (original name was: JAIUDR010000021.1); JAIUDR010000022 (original name was: JAIUDR010000022.1); JAIUDR010000023 (original name was: JAIUDR010000023.1); JAIUDR010000024 (original name was: JAIUDR010000024.1); JAIUDR010000025 (original name was: JAIUDR010000025.1); JAIUDR010000026 (original name was: JAIUDR010000026.1); JAIUDR010000028 (original name was: JAIUDR010000028.1); JAIUDR010000029 (original name was: JAIUDR010000029.1); JAIUDR010000030 (original name was: JAIUDR010000030.1); JAIUDR010000031 (original name was: JAIUDR010000031.1); JAIUDR010000033 (original name was: JAIUDR010000033.1); JAIUDR010000034 (original name was: JAIUDR010000034.1); JAIUDR010000035 (original name was: JAIUDR010000035.1); JAIUDR010000036 (original name was: JAIUDR010000036.1); JAIUDR010000037 (original name was: JAIUDR010000037.1); JAIUDR010000038 (original name was: JAIUDR010000038.1); JAIUDR010000039 (original name was: JAIUDR010000039.1); JAIUDR010000004 (original name was: JAIUDR010000004.1); JAIUDR010000040 (original name was: JAIUDR010000040.1); JAIUDR010000041 (original name was: JAIUDR010000041.1); JAIUDR010000043 (original name was: JAIUDR010000043.1); JAIUDR010000044 (original name was: JAIUDR010000044.1); JAIUDR010000045 (original name was: JAIUDR010000045.1); JAIUDR010000046 (original name was: JAIUDR010000046.1); JAIUDR010000047 (original name was: JAIUDR010000047.1); JAIUDR010000048 (original name was: JAIUDR010000048.1); JAIUDR010000053 (original name was: JAIUDR010000053.1); JAIUDR010000055 (original name was: JAIUDR010000055.1); JAIUDR010000056 (original name was: JAIUDR010000056.1); JAIUDR010000057 (original name was: JAIUDR010000057.1); JAIUDR010000058 (original name was: JAIUDR010000058.1); JAIUDR010000059 (original name was: JAIUDR010000059.1); JAIUDR010000006 (original name was: JAIUDR010000006.1); JAIUDR010000063 (original name was: JAIUDR010000063.1); JAIUDR010000064 (original name was: JAIUDR010000064.1); JAIUDR010000066 (original name was: JAIUDR010000066.1); JAIUDR010000007 (original name was: JAIUDR010000007.1); JAIUDR010000072 (original name was: JAIUDR010000072.1); JAIUDR010000008 (original name was: JAIUDR010000008.1); JAIUDR010000009 (original name was: JAIUDR010000009.1)

Compact view

c00004_JAIUDR0.. - Region 1 - fatty_acids-unassigned

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Location: 88,006 - 113,438 nt. (total: 25,433 nt) Show pHMM detection rules used

fatty_acids-unassigned: (not (EC1_2-faecali or baiH or baiCD or ECH1_Enoyl_CoA_DH1 or ECH1_Enoyl_CoA_DH2 or ECH1_Enoyl_CoA_DH3 or ECH1_Enoyl_CoA_DH4 or POR or POR_N or PFOR_II) and minimum(4, [AcetylCoA_hyd_C, Acyl-CoA_dh_1, Acyl-CoA_dh_2, EC1_2-faecali, ECH1_8_CARC, ECH_1, ECH_2, HBT, HCDH, HCDH_N, Thiolase_C, Thiolase_N, ketoacyl-synt]))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

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Gene details

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KnownClusterBlast

Similar known gene clusters

c00007_JAIUDR0.. - Region 1 - Fumarate2succinate,TPP_AA_metabolism

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Location: 178,111 - 223,919 nt. (total: 45,809 nt) Show pHMM detection rules used

Fumarate2succinate: (Succ_DH_flav_C and FAD_binding_2 and (Fer2_3 or Fer4_7 or SucD_FumR))
TPP_AA_metabolism: (TPP_enzyme_C and not (PFL-like or PFL_6_pcresol or PFL_9_tma or Gly_radical or Gly_430_pcre or Gly_8-9_TMA or PFL_acetate1 or PFL_acetate2 or Gly_radical_scatole or PFL_proline or PFL_toluene) and minimum(2, [ALS_ss_C, AlaDh_PNT_C, Arginase, BKACE, BcrAD_BadFG, Beta_elim_lyase, CPSase_L_D2, Cys_Met_Meta_PP, ELFV_dehydrog, GRDB, Glu_syn_central, Glu_synthase, Gly_reductase, HAAA1, HG2B1, HG2B2, HGD-D, HleuD1, HleuD2, HleuS1, HleuS2, Homoserine_dh, ILVD_EDD, IlvC, Lactoyl-CoA1, Lactoyl-CoA2, Lyase_aromatic, MAAL_C, OKR_DC_1_5_lysine, OKR_DC_1_5_ornithine, OKR_DC_1_7_arginine, OKR_DC_1_C, OTCace, PALP, Proline_reductase, Sacchrp_dh_C, TPL, Thr_dehydrat_C, TnaA, Urocanase]) and not (POR or POR_N or PFOR_II))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

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Gene details

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KnownClusterBlast

Similar known gene clusters

c00020_JAIUDR0.. - Region 1 - hydroxybenzoate2phenol

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Location: 26,145 - 48,183 nt. (total: 22,039 nt) Show pHMM detection rules used

hydroxybenzoate2phenol: (Flavoprotein and Phea_decarb and not ubi_syn)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

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Gene details

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KnownClusterBlast

Similar known gene clusters

c00023_JAIUDR0.. - Region 1 - fatty_acids-unassigned

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Location: 90,153 - 113,389 nt. (total: 23,237 nt) Show pHMM detection rules used

fatty_acids-unassigned: (not (EC1_2-faecali or baiH or baiCD or ECH1_Enoyl_CoA_DH1 or ECH1_Enoyl_CoA_DH2 or ECH1_Enoyl_CoA_DH3 or ECH1_Enoyl_CoA_DH4 or POR or POR_N or PFOR_II) and minimum(4, [AcetylCoA_hyd_C, Acyl-CoA_dh_1, Acyl-CoA_dh_2, EC1_2-faecali, ECH1_8_CARC, ECH_1, ECH_2, HBT, HCDH, HCDH_N, Thiolase_C, Thiolase_N, ketoacyl-synt]))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

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Gene details

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KnownClusterBlast

Similar known gene clusters

c00042_JAIUDR0.. - Region 1 - Nitrate_reductase,Putrescine2spermidine

Download region GenBank file

Location: 1 - 42,980 nt. (total: 42,980 nt) Show pHMM detection rules used

Region on contig edge.

Putrescine2spermidine: (minimum(2, [AdoMet_dc, Spermine_synt_N, Spermine_synth]) or (Orn_DAP_Arg_deC and Sacchrp_dh_C))
Nitrate_reductase: (Nitr_red_bet_C and Nitrate_red_del and Nitrate_red_gam and Molybdopterin and minimum(2, [Fer4_11, Molybdopterin, Molydop_binding, Nitr_red_alph_N]))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

KnownClusterBlast

Similar known gene clusters