GCA_020509345.1 - 11 region(s)

Identified secondary metabolite regions using strictness 'relaxed'

MPOQ01000110.1

Region	Type	From	To	Most similar known cluster		Similarity
Region 13.1	NRPS	1	20,662	surfactin	NRP:Lipopeptide	39%

MPOQ01000114.1

Region	Type	From	To	Most similar known cluster		Similarity
Region 17.1	NRPS	1	9,170	surfactin	NRP:Lipopeptide	8%

MPOQ01000012.1

Region	Type	From	To	Most similar known cluster		Similarity
Region 23.1	sactipeptide	15,473	37,084	subtilosin A	RiPP:Thiopeptide	100%
Region 23.2	other	37,968	78,663	bacilysin	Other	85%

MPOQ01000124.1

Region	Type	From	To	Most similar known cluster		Similarity
Region 27.1	NRPS	4,382	51,518	bacillibactin	NRP	100%

MPOQ01000237.1

Region	Type	From	To	Most similar known cluster		Similarity
Region 123.1	T3PKS	10,531	31,801

MPOQ01000024.1

Region	Type	From	To	Most similar known cluster		Similarity
Region 125.1	terpene	12,068	26,061

MPOQ01000030.1

Region	Type	From	To	Most similar known cluster		Similarity
Region 137.1	NRPS	27,372	55,173	surfactin	NRP:Lipopeptide	39%

MPOQ01000046.1

Region	Type	From	To	Most similar known cluster		Similarity
Region 151.1	sactipeptide,ranthipeptide	53,901	67,002	sporulation killing factor	RiPP:Head-to-tailcyclized peptide	100%

MPOQ01000081.1

Region	Type	From	To	Most similar known cluster		Similarity
Region 185.1	terpene	126,165	146,971

MPOQ01000086.1

Region	Type	From	To	Most similar known cluster		Similarity
Region 190.1	betalactone,NRPS-like	1	22,201	fengycin	NRP	86%

No secondary metabolite regions were found in these records:: MPOQ01000001.1; MPOQ01000010.1; MPOQ01000100.1; MPOQ01000101.1; MPOQ01000103.1; MPOQ01000104.1; MPOQ01000105.1; MPOQ01000106.1; MPOQ01000107.1; MPOQ01000108.1; MPOQ01000109.1; MPOQ01000011.1; MPOQ01000111.1; MPOQ01000112.1; MPOQ01000113.1; MPOQ01000115.1; MPOQ01000116.1; MPOQ01000117.1; MPOQ01000118.1; MPOQ01000119.1; MPOQ01000120.1; MPOQ01000121.1; MPOQ01000122.1; MPOQ01000125.1; MPOQ01000126.1; MPOQ01000127.1; MPOQ01000128.1; MPOQ01000129.1; MPOQ01000013.1; MPOQ01000130.1; MPOQ01000131.1; MPOQ01000132.1; MPOQ01000133.1; MPOQ01000135.1; MPOQ01000136.1; MPOQ01000137.1; MPOQ01000138.1; MPOQ01000139.1; MPOQ01000014.1; MPOQ01000141.1; MPOQ01000145.1; MPOQ01000146.1; MPOQ01000147.1; MPOQ01000148.1; MPOQ01000149.1; MPOQ01000015.1; MPOQ01000151.1; MPOQ01000152.1; MPOQ01000154.1; MPOQ01000155.1; MPOQ01000157.1; MPOQ01000158.1; MPOQ01000159.1; MPOQ01000016.1; MPOQ01000160.1; MPOQ01000161.1; MPOQ01000163.1; MPOQ01000165.1; MPOQ01000166.1; MPOQ01000167.1; MPOQ01000168.1; MPOQ01000169.1; MPOQ01000017.1; MPOQ01000170.1; MPOQ01000171.1; MPOQ01000172.1; MPOQ01000173.1; MPOQ01000174.1; MPOQ01000175.1; MPOQ01000176.1; MPOQ01000177.1; MPOQ01000018.1; MPOQ01000180.1; MPOQ01000181.1; MPOQ01000182.1; MPOQ01000183.1; MPOQ01000184.1; MPOQ01000186.1; MPOQ01000187.1; MPOQ01000188.1; MPOQ01000019.1; MPOQ01000190.1; MPOQ01000191.1; MPOQ01000192.1; MPOQ01000193.1; MPOQ01000194.1; MPOQ01000195.1; MPOQ01000196.1; MPOQ01000197.1; MPOQ01000198.1; MPOQ01000199.1; MPOQ01000020.1; MPOQ01000201.1; MPOQ01000202.1; MPOQ01000203.1; MPOQ01000206.1; MPOQ01000207.1; MPOQ01000208.1; MPOQ01000209.1; MPOQ01000021.1; MPOQ01000210.1; MPOQ01000211.1; MPOQ01000212.1; MPOQ01000213.1; MPOQ01000214.1; MPOQ01000216.1; MPOQ01000218.1; MPOQ01000022.1; MPOQ01000220.1; MPOQ01000222.1; MPOQ01000225.1; MPOQ01000227.1; MPOQ01000228.1; MPOQ01000229.1; MPOQ01000023.1; MPOQ01000230.1; MPOQ01000233.1; MPOQ01000235.1; MPOQ01000238.1; MPOQ01000245.1; MPOQ01000246.1; MPOQ01000247.1; MPOQ01000025.1; MPOQ01000250.1; MPOQ01000254.1; MPOQ01000026.1; MPOQ01000027.1; MPOQ01000028.1; MPOQ01000029.1; MPOQ01000003.1; MPOQ01000031.1; MPOQ01000032.1; MPOQ01000033.1; MPOQ01000034.1; MPOQ01000035.1; MPOQ01000036.1; MPOQ01000037.1; MPOQ01000038.1; MPOQ01000039.1; MPOQ01000004.1; MPOQ01000041.1; MPOQ01000042.1; MPOQ01000045.1; MPOQ01000048.1; MPOQ01000049.1; MPOQ01000005.1; MPOQ01000051.1; MPOQ01000052.1; MPOQ01000053.1; MPOQ01000054.1; MPOQ01000055.1; MPOQ01000056.1; MPOQ01000057.1; MPOQ01000058.1; MPOQ01000059.1; MPOQ01000006.1; MPOQ01000060.1; MPOQ01000061.1; MPOQ01000062.1; MPOQ01000063.1; MPOQ01000064.1; MPOQ01000066.1; MPOQ01000067.1; MPOQ01000068.1; MPOQ01000069.1; MPOQ01000007.1; MPOQ01000070.1; MPOQ01000071.1; MPOQ01000072.1; MPOQ01000073.1; MPOQ01000076.1; MPOQ01000077.1; MPOQ01000078.1; MPOQ01000079.1; MPOQ01000008.1; MPOQ01000080.1; MPOQ01000082.1; MPOQ01000083.1; MPOQ01000084.1; MPOQ01000085.1; MPOQ01000087.1; MPOQ01000088.1; MPOQ01000089.1; MPOQ01000009.1; MPOQ01000090.1; MPOQ01000091.1; MPOQ01000092.1; MPOQ01000093.1; MPOQ01000094.1; MPOQ01000095.1; MPOQ01000096.1; MPOQ01000097.1; MPOQ01000098.1; MPOQ01000099.1

Compact view

MPOQ01000110.1 - Region 1 - NRPS

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Location: 1 - 20,662 nt. (total: 20,662 nt) Show pHMM detection rules used

Region on contig edge.

NRPS: cds(Condensation and (AMP-binding or A-OX))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

Select a gene to view the details available for it

NRPS/PKS domains

KnownClusterBlast

Detailed domain annotation

Selected features only

Show module domains

Similar known gene clusters

NRPS/PKS products

NRPS/PKS monomers

Predicted core structure(s)

For candidate cluster 1, location 0 - 20662:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (leu)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS monomer predictions

ctg13_23

Search NORINE for peptide: strict or relaxed

AMP-binding (205..603): leu

NRPSPredictor2: leu

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: gly, ala, val, leu, ile, abu, iva
Small clusters prediction:: val, leu, ile, abu, iva
Single AA prediction:: leu

Stachelhaus prediction details:

Stachelhaus sequence:: DAFFLGCVFK
Nearest Stachelhaus code:: leu
Stachelhaus code match:: 100% (strong)

MPOQ01000114.1 - Region 1 - NRPS

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Location: 1 - 9,170 nt. (total: 9,170 nt) Show pHMM detection rules used

Region on contig edge.

NRPS: cds(Condensation and (AMP-binding or A-OX))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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zoom to selection

Gene details

Select a gene to view the details available for it

NRPS/PKS domains

KnownClusterBlast

Detailed domain annotation

Selected features only

Show module domains

Similar known gene clusters

NRPS/PKS products

NRPS/PKS monomers

Predicted core structure(s)

For candidate cluster 1, location 0 - 9170:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (val - asp)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS monomer predictions

ctg17_2

Search NORINE for peptide: strict or relaxed

AMP-binding (470..864): val

NRPSPredictor2: val

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: gly, ala, val, leu, ile, abu, iva
Small clusters prediction:: val, leu, ile, abu, iva
Single AA prediction:: val

Stachelhaus prediction details:

Stachelhaus sequence:: DAFWIGGTFK
Nearest Stachelhaus code:: val
Stachelhaus code match:: 100% (strong)

AMP-binding (1501..1904): asp

NRPSPredictor2: asp

SVM prediction details:

Predicted physicochemical class:: hydrophilic
Large clusters prediction:: asp, asn, glu, gln, aad
Small clusters prediction:: asp, asn
Single AA prediction:: asp

Stachelhaus prediction details:

Stachelhaus sequence:: DLTKVGHVGK
Nearest Stachelhaus code:: asp
Stachelhaus code match:: 100% (strong)

MPOQ01000012.1 - Region 1 - sactipeptide

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Location: 15,473 - 37,084 nt. (total: 21,612 nt) Show pHMM detection rules used

sactipeptide: (subtilosin or thuricin or TIGR04404 or Subtilosin_A or skfc)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

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KnownClusterBlast

Sactipeptides

Similar known gene clusters

Sactipeptide predictions

Putative Sactipeptide(s)

ctg23_22 leader / core peptide: MKKAVIVENK - GCATCSIGAACLVDGPIPDFEIAGATGLFGLWG

Sactipeptides

Core peptide predictions

ctg23_22: Putative sactipeptide; RODEO score: 33.0; Core sequence, approximate: GCATCSIGAACLVDGPIPDFEIAGATGLFGLWG

MPOQ01000012.1 - Region 2 - other

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Location: 37,968 - 78,663 nt. (total: 40,696 nt) Show pHMM detection rules used

other: (LmbU or Neocarzinostat or fom1 or bcpB or frbD or mitE or vlmB or prnB or CaiA or bacilysin or orf2_PTase)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

Select a gene to view the details available for it

KnownClusterBlast

Similar known gene clusters

MPOQ01000124.1 - Region 1 - NRPS

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Location: 4,382 - 51,518 nt. (total: 47,137 nt) Show pHMM detection rules used

NRPS: cds(Condensation and (AMP-binding or A-OX))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

Select a gene to view the details available for it

NRPS/PKS domains

KnownClusterBlast

Detailed domain annotation

Selected features only

Show module domains

Similar known gene clusters

NRPS/PKS products

NRPS/PKS monomers

Predicted core structure(s)

For candidate cluster 1, location 4381 - 51518:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (gly - thr)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS monomer predictions

ctg27_24

Search NORINE for peptide: strict or relaxed

AMP-binding (463..861): gly

NRPSPredictor2: gly

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: gly, ala, val, leu, ile, abu, iva
Small clusters prediction:: gly, ala
Single AA prediction:: gly

Stachelhaus prediction details:

Stachelhaus sequence:: DILQLGLIWK
Nearest Stachelhaus code:: gly
Stachelhaus code match:: 100% (strong)

AMP-binding (1519..1935): thr

NRPSPredictor2: thr

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: ser, thr, dhpg, hpg
Small clusters prediction:: thr
Single AA prediction:: thr

Stachelhaus prediction details:

Stachelhaus sequence:: DFWNIGMVHK
Nearest Stachelhaus code:: thr
Stachelhaus code match:: 100% (strong)

ctg27_26

Search NORINE for peptide: strict or relaxed

AMP-binding (31..435): dhb

NRPSPredictor2: dhb

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aromatic
Large clusters prediction:: dhb, sal
Small clusters prediction:: dhb, sal
Single AA prediction:: dhb

Stachelhaus prediction details:

Stachelhaus sequence:: PLPAQGVVNK
Nearest Stachelhaus code:: dhb
Stachelhaus code match:: 100% (strong)

MPOQ01000237.1 - Region 1 - T3PKS

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Location: 10,531 - 31,801 nt. (total: 21,271 nt) Show pHMM detection rules used

Region on contig edge.

T3PKS: (Chal_sti_synt_C or Chal_sti_synt_N)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

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KnownClusterBlast

Similar known gene clusters

No matches found.

MPOQ01000024.1 - Region 1 - terpene

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Location: 12,068 - 26,061 nt. (total: 13,994 nt) Show pHMM detection rules used

Region on contig edge.

terpene: (Terpene_synth or Terpene_synth_C or phytoene_synt or Lycopene_cycl or terpene_cyclase or NapT7 or fung_ggpps or fung_ggpps2 or trichodiene_synth or TRI5)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

Select a gene to view the details available for it

KnownClusterBlast

Similar known gene clusters

No matches found.

MPOQ01000030.1 - Region 1 - NRPS

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Location: 27,372 - 55,173 nt. (total: 27,802 nt) Show pHMM detection rules used

Region on contig edge.

NRPS: cds(Condensation and (AMP-binding or A-OX))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

NRPS/PKS domains

KnownClusterBlast

Detailed domain annotation

Selected features only

Show module domains

Similar known gene clusters

NRPS/PKS products

NRPS/PKS monomers

Predicted core structure(s)

For candidate cluster 1, location 27371 - 55173:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (glu - leu)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS monomer predictions

ctg137_46

Search NORINE for peptide: strict or relaxed

AMP-binding (466..867): glu

NRPSPredictor2: glu

SVM prediction details:

Predicted physicochemical class:: hydrophilic
Large clusters prediction:: asp, asn, glu, gln, aad
Small clusters prediction:: glu, gln
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: DAKDLGVVDK
Nearest Stachelhaus code:: glu
Stachelhaus code match:: 100% (strong)

AMP-binding (1510..1908): leu

NRPSPredictor2: leu

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: gly, ala, val, leu, ile, abu, iva
Small clusters prediction:: val, leu, ile, abu, iva
Single AA prediction:: leu

Stachelhaus prediction details:

Stachelhaus sequence:: DAFMMGMVFK
Nearest Stachelhaus code:: leu
Stachelhaus code match:: 100% (strong)

MPOQ01000046.1 - Region 1 - ranthipeptide,sactipeptide

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Location: 53,901 - 67,002 nt. (total: 13,102 nt) Show pHMM detection rules used

Region on contig edge.

sactipeptide: (subtilosin or thuricin or TIGR04404 or Subtilosin_A or skfc)
ranthipeptide: (TIGR03973 or SCIFF or (cds(PF04055 and (TIGR04085 or SPASM)) and minimum(1, [Bottromycin_Methyltransferase_RRE, Cyanobactin_D_RRE, Cytolysin_C_RRE, Goadsporin_CD_RRE, Heterocycloanthracin_C_RRE, Lanthipeptide_LanB_RRE, Lasso_Fused_RRE, Mycofactocin_RRE, NHLP_CD_RRE, Other_Sactipeptide_rSAM_RRE, Pantocin_Microcin_RRE, Plantazolicin_C_RRE, PlpY_RRE, PqqD_RRE, Proteusin_Epimerase_RRE, Proteusin_Methyltransferase_RRE, Quinohemoprotein_rSAM_RRE, Ranthipeptide_rSAM_RRE, Stand_Alone_Lasso_RRE, Streptide_RRE, Subtilosin_rSAM_RRE, Thiaglutamate_B_RRE, Thiaglutamate_G_RRE, Thiaglutamate_I_RRE, Thiopeptide_F_RRE, Thuricin_rSAM_RRE, Thurincin_rSAM_RRE, Trifolitoxin_RRE]) and not (TIGR01716 or subtilosin or TIGR02111 or TIGR03966 or TIGR04103 or YcaO or TIGR03882)))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

Select a gene to view the details available for it

KnownClusterBlast

Sactipeptides

Similar known gene clusters

Sactipeptide predictions

Sactipeptides - No core peptides found.

Sactipeptides

Core peptide predictions

No core peptides found.

MPOQ01000081.1 - Region 1 - terpene

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Location: 126,165 - 146,971 nt. (total: 20,807 nt) Show pHMM detection rules used

terpene: (Terpene_synth or Terpene_synth_C or phytoene_synt or Lycopene_cycl or terpene_cyclase or NapT7 or fung_ggpps or fung_ggpps2 or trichodiene_synth or TRI5)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

Select a gene to view the details available for it

KnownClusterBlast

Similar known gene clusters

No matches found.

MPOQ01000086.1 - Region 1 - NRPS-like,betalactone

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Location: 1 - 22,201 nt. (total: 22,201 nt) Show pHMM detection rules used

Region on contig edge.

betalactone: (HMGL-like and AMP-binding)
NRPS-like: cds((PP-binding or NAD_binding_4) and (AMP-binding or A-OX))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

NRPS/PKS domains

KnownClusterBlast

Detailed domain annotation

Selected features only

Show module domains

Similar known gene clusters

NRPS/PKS products

NRPS/PKS monomers

Predicted core structure(s)

For candidate cluster 1, location 0 - 22201:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (glu - D-tyr)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS monomer predictions

ctg190_6

Search NORINE for peptide: strict or relaxed

AMP-binding (6..186): X

NRPSPredictor2: hydrophobic-aliphatic

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: N/A
Small clusters prediction:: N/A
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: DL--iAApvK
Nearest Stachelhaus code:: phe
Stachelhaus code match:: 50% (weak)

ctg190_7

Search NORINE for peptide: strict or relaxed

AMP-binding (13..236): X

NRPSPredictor2: (unknown)

SVM prediction details:

NOTE: outside applicability domain

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: pro, pip
Small clusters prediction:: N/A
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: lk--yGMIlK
Nearest Stachelhaus code:: thr
Stachelhaus code match:: 40% (weak)

ctg190_14

Search NORINE for peptide: strict or relaxed

AMP-binding (1..293): ile

NRPSPredictor2: ile

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: gly, ala, val, leu, ile, abu, iva
Small clusters prediction:: val, leu, ile, abu, iva
Single AA prediction:: ile

Stachelhaus prediction details:

Stachelhaus sequence:: DAFFYGITFK
Nearest Stachelhaus code:: ile
Stachelhaus code match:: 100% (strong)

ctg190_17

Search NORINE for peptide: strict or relaxed

AMP-binding (463..864): glu

NRPSPredictor2: glu

SVM prediction details:

Predicted physicochemical class:: hydrophilic
Large clusters prediction:: asp, asn, glu, gln, aad
Small clusters prediction:: glu, gln
Single AA prediction:: glu

Stachelhaus prediction details:

Stachelhaus sequence:: DAWHFGGVDK
Nearest Stachelhaus code:: glu
Stachelhaus code match:: 100% (strong)

AMP-binding (1502..1896): tyr

NRPSPredictor2: tyr

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aromatic
Large clusters prediction:: phe, trp, phg, tyr, bht
Small clusters prediction:: tyr, bht
Single AA prediction:: tyr

Stachelhaus prediction details:

Stachelhaus sequence:: DGTITAEVAK
Nearest Stachelhaus code:: tyr
Stachelhaus code match:: 100% (strong)