GCA_020526625.1 - 3 region(s)

Identified primary metabolite regions

JAHXFE010000003 (original name was: JAHXFE010000003.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 8.1	Fumarate2succinate	SCFA	1	15,269	Fumarate2succinate suc dh E. coli	SUC	100%
Region 8.2	Pyruvate2acetate-formate	SCFA	502,926	526,302	Pyruvate to acetate-formate E. coli	PFL_acetate	100%
Region 8.3	Others_HGD_unassigned	Putative	808,848	833,702

No primary metabolite regions were found in these records:: JAHXFE010000001 (original name was: JAHXFE010000001.1); JAHXFE010000010 (original name was: JAHXFE010000010.1); JAHXFE010000011 (original name was: JAHXFE010000011.1); JAHXFE010000012 (original name was: JAHXFE010000012.1); JAHXFE010000013 (original name was: JAHXFE010000013.1); JAHXFE010000014 (original name was: JAHXFE010000014.1); JAHXFE010000002 (original name was: JAHXFE010000002.1); JAHXFE010000004 (original name was: JAHXFE010000004.1); JAHXFE010000005 (original name was: JAHXFE010000005.1); JAHXFE010000006 (original name was: JAHXFE010000006.1); JAHXFE010000008 (original name was: JAHXFE010000008.1); JAHXFE010000009 (original name was: JAHXFE010000009.1)

Compact view

c00008_JAHXFE0.. - Region 1 - Fumarate2succinate

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Location: 1 - 15,269 nt. (total: 15,269 nt) Show pHMM detection rules used

Region on contig edge.

Fumarate2succinate: (Succ_DH_flav_C and FAD_binding_2 and (Fer2_3 or Fer4_7 or SucD_FumR))

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core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

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Gene details

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KnownClusterBlast

Similar known gene clusters

c00008_JAHXFE0.. - Region 2 - Pyruvate2acetate-formate

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Location: 502,926 - 526,302 nt. (total: 23,377 nt) Show pHMM detection rules used

Pyruvate2acetate-formate: ((PFL_acetate1 or PFL_acetate2) and Radical_SAM)

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core biosynthetic genes

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resistance genes

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Gene details

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KnownClusterBlast

Similar known gene clusters

c00008_JAHXFE0.. - Region 3 - Others_HGD_unassigned

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Location: 808,848 - 833,702 nt. (total: 24,855 nt) Show pHMM detection rules used

Others_HGD_unassigned: (minimum(1, [HAAA1, HG2B1, HG2B2, HGD-D, HleuD1, HleuD2, HleuS1, HleuS2, Lactoyl-CoA1, Lactoyl-CoA2]) and minimum(1, [ACP_syn_III, ACP_syn_III_C, AcetylCoA_hyd_C, AcetylCoA_hydro, Acyl-CoA_dh_1, Acyl-CoA_dh_2, AdoHcyase_NAD, AlaDh_PNT_C, BcrAD_BadFG, Biotin_lipoyl, Carboxyl_trans, CoA_trans, CoA_trans_230_acto, CoA_trans_6_Glutaconate, CoA_transf_3, ECH_1, ECH_2, ETF, ETF_alpha, FGGY_C, HCDH, HCDH_N, Hacid_dh, Hacid_dh_C, Mal_decarbox_Al, Peptidase_M22, Peptidase_M23, Thiolase_C, Thiolase_N, ketoacyl-synt]) and not (minimum(2, [AcetylCoA_hyd_C, BcrAD_BadFG, CoA_trans, CoA_trans_230_acto, Mal_decarbox_Al]) and Lactoyl-CoA2 and Lactoyl-CoA1) and not (minimum(4, [ACP_syn_III, ACP_syn_III_C, Acyl-CoA_dh_1, Acyl-CoA_dh_2, AlaDh_PNT_C, BcrAD_BadFG, ECH_1, ECH_2, ETF, ETF_alpha, HCDH, HCDH_N, Hacid_dh, Hacid_dh_C, IlvN, NAD_Gly3P_dh_N, Thiolase_C, Thiolase_N, ketoacyl-synt]) and HAAA1 and not HleuS1))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

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Gene details

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KnownClusterBlast

Similar known gene clusters

No matches found.