GCA_020526645.1 - 3 region(s)

Identified primary metabolite regions

JAHXFF010000001 (original name was: JAHXFF010000001.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 1.1	Fumarate2succinate	SCFA	818,316	841,160	Fumarate2succinate suc dh E. coli	SUC	100%

JAHXFF010000002 (original name was: JAHXFF010000002.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 6.1	Pyruvate2acetate-formate	SCFA	201,089	224,465	Pyruvate to acetate-formate E. coli	PFL_acetate	100%
Region 6.2	Others_HGD_unassigned	Putative	485,402	510,160

No primary metabolite regions were found in these records:: JAHXFF010000010 (original name was: JAHXFF010000010.1); JAHXFF010000011 (original name was: JAHXFF010000011.1); JAHXFF010000012 (original name was: JAHXFF010000012.1); JAHXFF010000013 (original name was: JAHXFF010000013.1); JAHXFF010000003 (original name was: JAHXFF010000003.1); JAHXFF010000004 (original name was: JAHXFF010000004.1); JAHXFF010000006 (original name was: JAHXFF010000006.1); JAHXFF010000007 (original name was: JAHXFF010000007.1); JAHXFF010000008 (original name was: JAHXFF010000008.1); JAHXFF010000009 (original name was: JAHXFF010000009.1)

Compact view

c00001_JAHXFF0.. - Region 1 - Fumarate2succinate

Download region GenBank file

Location: 818,316 - 841,160 nt. (total: 22,845 nt) Show pHMM detection rules used

Fumarate2succinate: (Succ_DH_flav_C and FAD_binding_2 and (Fer2_3 or Fer4_7 or SucD_FumR))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

KnownClusterBlast

Similar known gene clusters

c00006_JAHXFF0.. - Region 1 - Pyruvate2acetate-formate

Download region GenBank file

Location: 201,089 - 224,465 nt. (total: 23,377 nt) Show pHMM detection rules used

Pyruvate2acetate-formate: ((PFL_acetate1 or PFL_acetate2) and Radical_SAM)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

KnownClusterBlast

Similar known gene clusters

c00006_JAHXFF0.. - Region 2 - Others_HGD_unassigned

Download region GenBank file

Location: 485,402 - 510,160 nt. (total: 24,759 nt) Show pHMM detection rules used

Others_HGD_unassigned: (minimum(1, [HAAA1, HG2B1, HG2B2, HGD-D, HleuD1, HleuD2, HleuS1, HleuS2, Lactoyl-CoA1, Lactoyl-CoA2]) and minimum(1, [ACP_syn_III, ACP_syn_III_C, AcetylCoA_hyd_C, AcetylCoA_hydro, Acyl-CoA_dh_1, Acyl-CoA_dh_2, AdoHcyase_NAD, AlaDh_PNT_C, BcrAD_BadFG, Biotin_lipoyl, Carboxyl_trans, CoA_trans, CoA_trans_230_acto, CoA_trans_6_Glutaconate, CoA_transf_3, ECH_1, ECH_2, ETF, ETF_alpha, FGGY_C, HCDH, HCDH_N, Hacid_dh, Hacid_dh_C, Mal_decarbox_Al, Peptidase_M22, Peptidase_M23, Thiolase_C, Thiolase_N, ketoacyl-synt]) and not (minimum(2, [AcetylCoA_hyd_C, BcrAD_BadFG, CoA_trans, CoA_trans_230_acto, Mal_decarbox_Al]) and Lactoyl-CoA2 and Lactoyl-CoA1) and not (minimum(4, [ACP_syn_III, ACP_syn_III_C, Acyl-CoA_dh_1, Acyl-CoA_dh_2, AlaDh_PNT_C, BcrAD_BadFG, ECH_1, ECH_2, ETF, ETF_alpha, HCDH, HCDH_N, Hacid_dh, Hacid_dh_C, IlvN, NAD_Gly3P_dh_N, Thiolase_C, Thiolase_N, ketoacyl-synt]) and HAAA1 and not HleuS1))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

KnownClusterBlast

Similar known gene clusters

No matches found.