Select genomic region:
Overview
18.1
27.1
42.1
49.1

### Identified secondary metabolite regions using strictness 'relaxed'

JAJGTF010000139 (original name was: JAJGTF010000139.1)

Region | Type | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | ---
Region 18.1 | RiPP-like | 2,238 | 17,918 | gassericin T | RiPP | 33%

JAJGTF010000147 (original name was: JAJGTF010000147.1)

Region | Type | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | ---
Region 27.1 | lanthipeptide-class-ii,RiPP-like | 1 | 17,973 |

JAJGTF010000162 (original name was: JAJGTF010000162.1)

Region | Type | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | ---
Region 42.1 | RiPP-like | 61,949 | 74,099 |

JAJGTF010000026 (original name was: JAJGTF010000026.1)

Region | Type | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | ---
Region 49.1 | T3PKS | 11,564 | 52,721 |

Region | Type | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | ---
Region 18.1 | RiPP-like | 2,238 | 17,918 | gassericin T | RiPP | 33%
Region 27.1 | lanthipeptide-class-ii,RiPP-like | 1 | 17,973 |
Region 42.1 | RiPP-like | 61,949 | 74,099 |
Region 49.1 | T3PKS | 11,564 | 52,721 |

No secondary metabolite regions were found in these records:
  JAJGTF010000010 (original name was: JAJGTF010000010.1)
  JAJGTF010000108 (original name was: JAJGTF010000108.1)
  JAJGTF010000114 (original name was: JAJGTF010000114.1)
  JAJGTF010000120 (original name was: JAJGTF010000120.1)
  JAJGTF010000121 (original name was: JAJGTF010000121.1)
  JAJGTF010000125 (original name was: JAJGTF010000125.1)
  JAJGTF010000128 (original name was: JAJGTF010000128.1)
  JAJGTF010000129 (original name was: JAJGTF010000129.1)
  JAJGTF010000130 (original name was: JAJGTF010000130.1)
  JAJGTF010000131 (original name was: JAJGTF010000131.1)
  JAJGTF010000132 (original name was: JAJGTF010000132.1)
  JAJGTF010000133 (original name was: JAJGTF010000133.1)
  JAJGTF010000134 (original name was: JAJGTF010000134.1)
  JAJGTF010000135 (original name was: JAJGTF010000135.1)
  JAJGTF010000136 (original name was: JAJGTF010000136.1)
  JAJGTF010000137 (original name was: JAJGTF010000137.1)
  JAJGTF010000138 (original name was: JAJGTF010000138.1)
  JAJGTF010000014 (original name was: JAJGTF010000014.1)
  JAJGTF010000140 (original name was: JAJGTF010000140.1)
  JAJGTF010000141 (original name was: JAJGTF010000141.1)
  JAJGTF010000142 (original name was: JAJGTF010000142.1)
  JAJGTF010000143 (original name was: JAJGTF010000143.1)
  JAJGTF010000144 (original name was: JAJGTF010000144.1)
  JAJGTF010000145 (original name was: JAJGTF010000145.1)
  JAJGTF010000146 (original name was: JAJGTF010000146.1)
  JAJGTF010000148 (original name was: JAJGTF010000148.1)
  JAJGTF010000149 (original name was: JAJGTF010000149.1)
  JAJGTF010000150 (original name was: JAJGTF010000150.1)
  JAJGTF010000151 (original name was: JAJGTF010000151.1)
  JAJGTF010000152 (original name was: JAJGTF010000152.1)
  JAJGTF010000153 (original name was: JAJGTF010000153.1)
  JAJGTF010000154 (original name was: JAJGTF010000154.1)
  JAJGTF010000155 (original name was: JAJGTF010000155.1)
  JAJGTF010000156 (original name was: JAJGTF010000156.1)
  JAJGTF010000157 (original name was: JAJGTF010000157.1)
  JAJGTF010000158 (original name was: JAJGTF010000158.1)
  JAJGTF010000159 (original name was: JAJGTF010000159.1)
  JAJGTF010000160 (original name was: JAJGTF010000160.1)
  JAJGTF010000161 (original name was: JAJGTF010000161.1)
  JAJGTF010000163 (original name was: JAJGTF010000163.1)
  JAJGTF010000164 (original name was: JAJGTF010000164.1)
  JAJGTF010000165 (original name was: JAJGTF010000165.1)
  JAJGTF010000166 (original name was: JAJGTF010000166.1)
  JAJGTF010000167 (original name was: JAJGTF010000167.1)
  JAJGTF010000025 (original name was: JAJGTF010000025.1)
  JAJGTF010000034 (original name was: JAJGTF010000034.1)
  JAJGTF010000035 (original name was: JAJGTF010000035.1)
  JAJGTF010000040 (original name was: JAJGTF010000040.1)
  JAJGTF010000051 (original name was: JAJGTF010000051.1)
  JAJGTF010000066 (original name was: JAJGTF010000066.1)
  JAJGTF010000070 (original name was: JAJGTF010000070.1)
  JAJGTF010000071 (original name was: JAJGTF010000071.1)
  JAJGTF010000075 (original name was: JAJGTF010000075.1)
  JAJGTF010000076 (original name was: JAJGTF010000076.1)
  JAJGTF010000009 (original name was: JAJGTF010000009.1)
  JAJGTF010000092 (original name was: JAJGTF010000092.1)
  JAJGTF010000093 (original name was: JAJGTF010000093.1)
  JAJGTF010000098 (original name was: JAJGTF010000098.1)

Compact view
c00018_JAJGTF0.. - Region 1 - RiPP-like
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
More detailed help is available here.
Download region GenBank file
Download region SVG
Location: 2,238 - 17,918 nt. (total: 15,681 nt) Show pHMM detection rules used
RiPP-like: (strepbact or Antimicrobial14 or Bacteriocin_IId or BacteriocIIc_cy or Bacteriocin_II or Bacteriocin_IIi or Lactococcin or Antimicrobial17 or Lactococcin_972 or Bacteriocin_IIc or LcnG-beta or Cloacin or Linocin_M18 or TIGR03651 or TIGR03693 or TIGR03601 or TIGR03795 or TIGR03975 or DUF692 or TIGR01193)

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
other genes
resistance
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
KnownClusterBlast
Similar known gene clusters
Shows clusters from the MiBIG database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
Click on an accession to open that entry in the MiBIG database.
c00027_JAJGTF0.. - Region 1 - RiPP-like,lanthipeptide-class-ii
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
More detailed help is available here.
Download region GenBank file
Download region SVG
Location: 1 - 17,973 nt. (total: 17,973 nt) Show pHMM detection rules used
Region on contig edge.
lanthipeptide-class-ii: cds(LANC_like and DUF4135)
RiPP-like: (strepbact or Antimicrobial14 or Bacteriocin_IId or BacteriocIIc_cy or Bacteriocin_II or Bacteriocin_IIi or Lactococcin or Antimicrobial17 or Lactococcin_972 or Bacteriocin_IIc or LcnG-beta or Cloacin or Linocin_M18 or TIGR03651 or TIGR03693 or TIGR03601 or TIGR03795 or TIGR03975 or DUF692 or TIGR01193)

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
other genes
resistance
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
Lanthipeptides
KnownClusterBlast
Lanthipeptide predictions
Lists the possible core peptides for each biosynthetic enzyme, including the predicted class. Each core peptide shows the leader and core peptide sequences, separated by a dash.

#### Lanthipeptide(s) for ctg27_12 - Putative Class II

ctg27_10 leader / core peptide
  MSNKDLNNIVGG - AFEEMDhaIQQMDhbEIQGLGVDhbQVQDha DhbPDhbVAIDhaRAGIAADhaRADha DhaVRCARWVDhaAAAGGAYDhbWKKHH
ctg27_22 leader / core peptide
  LATSQQEVALKGS - RERCNLDhaLQAIRVDhaQLDhbKLMC DhbRDhaKLLANANKCYNLK

#### Legend:

Dha: Didehydroalanine
Dhb: Didehydrobutyrine
Similar known gene clusters
Shows clusters from the MiBIG database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
Click on an accession to open that entry in the MiBIG database.

No matches found.

Lanthipeptides
Core peptide predictions
Lists the possible core peptides in the region. Each core peptide lists the number of lanthionine bridges, possible molecular weights, and the scores for cleavage site prediction and RODEO.

ctg27_10 - Class II
  Cleavage pHMM score: -0.90
  RODEO score: 0
  Monoisotopic mass: 6370.3 Da
  Molecular weight: 6374.2 Da
  Number of bridges: 1
  Alternative weights
    (assuming N unmodified Ser/Thr residues)
    6392.2 Da N = 1
    6410.2 Da N = 2
    6428.2 Da N = 3
    6446.2 Da N = 4
    6464.3 Da N = 5
    6482.3 Da N = 6
    6500.3 Da N = 7
    6518.3 Da N = 8
    6536.3 Da N = 9
    6554.4 Da N = 10
    6572.4 Da N = 11
ctg27_22 - Class II
  Cleavage pHMM score: -7.10
  RODEO score: 0
  Monoisotopic mass: 4189.3 Da
  Molecular weight: 4192.0 Da
  Number of bridges: 3
  Alternative weights
    (assuming N unmodified Ser/Thr residues)
    4210.0 Da N = 1
    4228.0 Da N = 2

c00042_JAJGTF0.. - Region 1 - RiPP-like
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
More detailed help is available here.
Download region GenBank file
Download region SVG
Location: 61,949 - 74,099 nt. (total: 12,151 nt) Show pHMM detection rules used
RiPP-like: (strepbact or Antimicrobial14 or Bacteriocin_IId or BacteriocIIc_cy or Bacteriocin_II or Bacteriocin_IIi or Lactococcin or Antimicrobial17 or Lactococcin_972 or Bacteriocin_IIc or LcnG-beta or Cloacin or Linocin_M18 or TIGR03651 or TIGR03693 or TIGR03601 or TIGR03795 or TIGR03975 or DUF692 or TIGR01193)

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
other genes
resistance
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
KnownClusterBlast
Similar known gene clusters
Shows clusters from the MiBIG database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
Click on an accession to open that entry in the MiBIG database.

No matches found.

c00049_JAJGTF0.. - Region 1 - T3PKS
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
More detailed help is available here.
Download region GenBank file
Download region SVG
Location: 11,564 - 52,721 nt. (total: 41,158 nt) Show pHMM detection rules used
T3PKS: (Chal_sti_synt_C or Chal_sti_synt_N)

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
other genes
resistance
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
KnownClusterBlast
Similar known gene clusters
Shows clusters from the MiBIG database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
Click on an accession to open that entry in the MiBIG database.

No matches found.