GCA_020784435.1 - 3 region(s) - antiSMASH results

Identified secondary metabolite regions using strictness 'relaxed'

JAJGTN010000126 (original name was: JAJGTN010000126.1)

Region	Type	From	To	Most similar known cluster		Similarity
Region 25.1	T3PKS	979	22,237

JAJGTN010000137 (original name was: JAJGTN010000137.1)

Region	Type	From	To	Most similar known cluster		Similarity
Region 36.1	lanthipeptide-class-ii,RiPP-like	7,378	29,488

JAJGTN010000027 (original name was: JAJGTN010000027.1)

Region	Type	From	To	Most similar known cluster		Similarity
Region 38.1	RiPP-like	70,115	82,265

Region	Type	From	To	Similarity
Region 25.1	T3PKS	979	22,237
Region 36.1	lanthipeptide-class-ii,RiPP-like	7,378	29,488
Region 38.1	RiPP-like	70,115	82,265

Compact view

c00025_JAJGTN0.. - Region 1 - T3PKS

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Location: 979 - 22,237 nt. (total: 21,259 nt) Show pHMM detection rules used

Region on contig edge.

T3PKS: (Chal_sti_synt_C or Chal_sti_synt_N)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

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KnownClusterBlast

Similar known gene clusters

No matches found.

c00036_JAJGTN0.. - Region 1 - RiPP-like,lanthipeptide-class-ii

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Location: 7,378 - 29,488 nt. (total: 22,111 nt) Show pHMM detection rules used

Region on contig edge.

lanthipeptide-class-ii: cds(LANC_like and DUF4135)
RiPP-like: (strepbact or Antimicrobial14 or Bacteriocin_IId or BacteriocIIc_cy or Bacteriocin_II or Bacteriocin_IIi or Lactococcin or Antimicrobial17 or Lactococcin_972 or Bacteriocin_IIc or LcnG-beta or Cloacin or Linocin_M18 or TIGR03651 or TIGR03693 or TIGR03601 or TIGR03795 or TIGR03975 or DUF692 or TIGR01193)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

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Lanthipeptides

KnownClusterBlast

Lanthipeptide predictions

Lanthipeptide(s) for ctg36_22 - Putative Class II

ctg36_24 leader / core peptide: MSNKDLNNIVGG - AFEEMDhaIQQMDhbEIQGLGVDhbQVQDhaDhbPDhbVAIDhaRAGIAADhaRADhaDhaVRCARWVDhaAAAGGAYDhbWKKHH

Legend:

Dha: Didehydroalanine
Dhb: Didehydrobutyrine

Similar known gene clusters

No matches found.

Lanthipeptides

Core peptide predictions

ctg36_24 - Class II

Cleavage pHMM score: -0.90

RODEO score: 0

Monoisotopic mass: 6370.3 Da

Molecular weight: 6374.2 Da

Number of bridges: 1

Alternative weights: (assuming N unmodified Ser/Thr residues); 6392.2 Da N = 1; 6410.2 Da N = 2; 6428.2 Da N = 3; 6446.2 Da N = 4; 6464.3 Da N = 5; 6482.3 Da N = 6; 6500.3 Da N = 7; 6518.3 Da N = 8; 6536.3 Da N = 9; 6554.4 Da N = 10; 6572.4 Da N = 11

c00038_JAJGTN0.. - Region 1 - RiPP-like

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Location: 70,115 - 82,265 nt. (total: 12,151 nt) Show pHMM detection rules used

RiPP-like: (strepbact or Antimicrobial14 or Bacteriocin_IId or BacteriocIIc_cy or Bacteriocin_II or Bacteriocin_IIi or Lactococcin or Antimicrobial17 or Lactococcin_972 or Bacteriocin_IIc or LcnG-beta or Cloacin or Linocin_M18 or TIGR03651 or TIGR03693 or TIGR03601 or TIGR03795 or TIGR03975 or DUF692 or TIGR01193)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

KnownClusterBlast

Similar known gene clusters

No matches found.