GCA_020785035.1 - 4 region(s) - antiSMASH results

Identified secondary metabolite regions using strictness 'relaxed'

JAJGUR010000102 (original name was: JAJGUR010000102.1)

Region	Type	From	To	Most similar known cluster		Similarity
Region 3.1	NRPS	1	31,295

JAJGUR010000121 (original name was: JAJGUR010000121.1)

Region	Type	From	To	Most similar known cluster		Similarity
Region 22.1	RiPP-like	13,168	28,334	gassericin T	RiPP	33%

JAJGUR010000126 (original name was: JAJGUR010000126.1)

Region	Type	From	To	Most similar known cluster		Similarity
Region 27.1	T3PKS	1	12,992

JAJGUR010000086 (original name was: JAJGUR010000086.1)

Region	Type	From	To	Most similar known cluster		Similarity
Region 47.1	RiPP-like	68,438	80,588

Region	Type	From	To	Most similar known cluster	Similarity
Region 3.1	NRPS	1	31,295
Region 22.1	RiPP-like	13,168	28,334	gassericin T	RiPP	33%
Region 27.1	T3PKS	1	12,992
Region 47.1	RiPP-like	68,438	80,588

Compact view

c00003_JAJGUR0.. - Region 1 - NRPS

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Location: 1 - 31,295 nt. (total: 31,295 nt) Show pHMM detection rules used

Region on contig edge.

NRPS: cds(Condensation and (AMP-binding or A-OX))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

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NRPS/PKS domains

KnownClusterBlast

Detailed domain annotation

Selected features only

Show module domains

Similar known gene clusters

No matches found.

NRPS/PKS products

NRPS/PKS monomers

Predicted core structure(s)

For candidate cluster 1, location 0 - 31295:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (X)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS monomer predictions

ctg3_10

Search NORINE for peptide: strict or relaxed

AMP-binding (441..822): X

NRPSPredictor2: hydrophobic-aliphatic

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: N/A
Small clusters prediction:: N/A
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: DyftFGLIiK
Nearest Stachelhaus code:: gln
Stachelhaus code match:: 60% (weak)

c00022_JAJGUR0.. - Region 1 - RiPP-like

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Location: 13,168 - 28,334 nt. (total: 15,167 nt) Show pHMM detection rules used

RiPP-like: (strepbact or Antimicrobial14 or Bacteriocin_IId or BacteriocIIc_cy or Bacteriocin_II or Bacteriocin_IIi or Lactococcin or Antimicrobial17 or Lactococcin_972 or Bacteriocin_IIc or LcnG-beta or Cloacin or Linocin_M18 or TIGR03651 or TIGR03693 or TIGR03601 or TIGR03795 or TIGR03975 or DUF692 or TIGR01193)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

Select a gene to view the details available for it

KnownClusterBlast

Similar known gene clusters

c00027_JAJGUR0.. - Region 1 - T3PKS

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Location: 1 - 12,992 nt. (total: 12,992 nt) Show pHMM detection rules used

Region on contig edge.

T3PKS: (Chal_sti_synt_C or Chal_sti_synt_N)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

KnownClusterBlast

Similar known gene clusters

No matches found.

c00047_JAJGUR0.. - Region 1 - RiPP-like

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Location: 68,438 - 80,588 nt. (total: 12,151 nt) Show pHMM detection rules used

RiPP-like: (strepbact or Antimicrobial14 or Bacteriocin_IId or BacteriocIIc_cy or Bacteriocin_II or Bacteriocin_IIi or Lactococcin or Antimicrobial17 or Lactococcin_972 or Bacteriocin_IIc or LcnG-beta or Cloacin or Linocin_M18 or TIGR03651 or TIGR03693 or TIGR03601 or TIGR03795 or TIGR03975 or DUF692 or TIGR01193)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

KnownClusterBlast

Similar known gene clusters

No matches found.