Select genomic region:
Overview
7.1
50.1

### Identified secondary metabolite regions using strictness 'relaxed'

JAJNSX010000015 (original name was: JAJNSX010000015.1)

Region | Type | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | ---
Region 7.1 | lanthipeptide-class-iii | 21,150 | 43,651 |

JAJNSX010000009 (original name was: JAJNSX010000009.1)

Region | Type | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | ---
Region 50.1 | lanthipeptide-class-iv | 27,043 | 49,238 |

Region | Type | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | ---
Region 7.1 | lanthipeptide-class-iii | 21,150 | 43,651 |
Region 50.1 | lanthipeptide-class-iv | 27,043 | 49,238 |

No secondary metabolite regions were found in these records:
  JAJNSX010000001 (original name was: JAJNSX010000001.1)
  JAJNSX010000010 (original name was: JAJNSX010000010.1)
  JAJNSX010000011 (original name was: JAJNSX010000011.1)
  JAJNSX010000012 (original name was: JAJNSX010000012.1)
  JAJNSX010000013 (original name was: JAJNSX010000013.1)
  JAJNSX010000014 (original name was: JAJNSX010000014.1)
  JAJNSX010000016 (original name was: JAJNSX010000016.1)
  JAJNSX010000017 (original name was: JAJNSX010000017.1)
  JAJNSX010000018 (original name was: JAJNSX010000018.1)
  JAJNSX010000019 (original name was: JAJNSX010000019.1)
  JAJNSX010000002 (original name was: JAJNSX010000002.1)
  JAJNSX010000020 (original name was: JAJNSX010000020.1)
  JAJNSX010000021 (original name was: JAJNSX010000021.1)
  JAJNSX010000022 (original name was: JAJNSX010000022.1)
  JAJNSX010000023 (original name was: JAJNSX010000023.1)
  JAJNSX010000024 (original name was: JAJNSX010000024.1)
  JAJNSX010000025 (original name was: JAJNSX010000025.1)
  JAJNSX010000026 (original name was: JAJNSX010000026.1)
  JAJNSX010000027 (original name was: JAJNSX010000027.1)
  JAJNSX010000028 (original name was: JAJNSX010000028.1)
  JAJNSX010000029 (original name was: JAJNSX010000029.1)
  JAJNSX010000003 (original name was: JAJNSX010000003.1)
  JAJNSX010000030 (original name was: JAJNSX010000030.1)
  JAJNSX010000031 (original name was: JAJNSX010000031.1)
  JAJNSX010000032 (original name was: JAJNSX010000032.1)
  JAJNSX010000033 (original name was: JAJNSX010000033.1)
  JAJNSX010000034 (original name was: JAJNSX010000034.1)
  JAJNSX010000035 (original name was: JAJNSX010000035.1)
  JAJNSX010000036 (original name was: JAJNSX010000036.1)
  JAJNSX010000037 (original name was: JAJNSX010000037.1)
  JAJNSX010000038 (original name was: JAJNSX010000038.1)
  JAJNSX010000039 (original name was: JAJNSX010000039.1)
  JAJNSX010000004 (original name was: JAJNSX010000004.1)
  JAJNSX010000040 (original name was: JAJNSX010000040.1)
  JAJNSX010000041 (original name was: JAJNSX010000041.1)
  JAJNSX010000042 (original name was: JAJNSX010000042.1)
  JAJNSX010000043 (original name was: JAJNSX010000043.1)
  JAJNSX010000044 (original name was: JAJNSX010000044.1)
  JAJNSX010000045 (original name was: JAJNSX010000045.1)
  JAJNSX010000046 (original name was: JAJNSX010000046.1)
  JAJNSX010000047 (original name was: JAJNSX010000047.1)
  JAJNSX010000048 (original name was: JAJNSX010000048.1)
  JAJNSX010000049 (original name was: JAJNSX010000049.1)
  JAJNSX010000005 (original name was: JAJNSX010000005.1)
  JAJNSX010000050 (original name was: JAJNSX010000050.1)
  JAJNSX010000006 (original name was: JAJNSX010000006.1)
  JAJNSX010000007 (original name was: JAJNSX010000007.1)
  JAJNSX010000008 (original name was: JAJNSX010000008.1)

Compact view
c00007_JAJNSX0.. - Region 1 - lanthipeptide-class-iii
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
More detailed help is available here.
Download region GenBank file
Download region SVG
Location: 21,150 - 43,651 nt. (total: 22,502 nt) Show pHMM detection rules used
lanthipeptide-class-iii: (micKC and not PKS_KS)

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
other genes
resistance
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
Lanthipeptides
KnownClusterBlast
Lanthipeptide predictions
Lists the possible core peptides for each biosynthetic enzyme, including the predicted class. Each core peptide shows the leader and core peptide sequences, separated by a dash.
Lanthipeptides - No core peptides found.
Similar known gene clusters
Shows clusters from the MiBIG database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
Click on an accession to open that entry in the MiBIG database.

No matches found.

Lanthipeptides
Core peptide predictions
Lists the possible core peptides in the region. Each core peptide lists the number of lanthionine bridges, possible molecular weights, and the scores for cleavage site prediction and RODEO.
No core peptides found.
c00050_JAJNSX0.. - Region 1 - lanthipeptide-class-iv
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
More detailed help is available here.
Download region GenBank file
Download region SVG
Location: 27,043 - 49,238 nt. (total: 22,196 nt) Show pHMM detection rules used
lanthipeptide-class-iv: (cds(LANC_like and Pkinase) and not micKC)

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
other genes
resistance
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
Lanthipeptides
KnownClusterBlast
Lanthipeptide predictions
Lists the possible core peptides for each biosynthetic enzyme, including the predicted class. Each core peptide shows the leader and core peptide sequences, separated by a dash.
Lanthipeptides - No core peptides found.
Similar known gene clusters
Shows clusters from the MiBIG database that are similar to the current region. Genes marked with the same colour are interrelated. White genes have no relationship.
Click on reference genes to show details of similarities to genes within the current region.
Click on an accession to open that entry in the MiBIG database.

No matches found.

Lanthipeptides
Core peptide predictions
Lists the possible core peptides in the region. Each core peptide lists the number of lanthionine bridges, possible molecular weights, and the scores for cleavage site prediction and RODEO.
No core peptides found.