GCA_021991685.1 - 5 region(s) - antiSMASH results

Identified secondary metabolite regions using strictness 'relaxed'

JAGFMA010000012 (original name was: JAGFMA010000012.1)

Region	Type	From	To	Most similar known cluster		Similarity
Region 4.1	arylpolyene	110	40,292

JAGFMA010000002 (original name was: JAGFMA010000002.1)

Region	Type	From	To	Most similar known cluster		Similarity
Region 12.1	terpene	11,162	34,731	carotenoid	Terpene	100%
Region 12.2	NRPS	260,652	304,518	turnerbactin	NRP	30%

JAGFMA010000005 (original name was: JAGFMA010000005.1)

Region	Type	From	To	Most similar known cluster		Similarity
Region 29.1	ladderane	1	22,441

JAGFMA010000008 (original name was: JAGFMA010000008.1)

Region	Type	From	To	Most similar known cluster		Similarity
Region 32.1	thiopeptide	128,854	155,154	O-antigen	Saccharide	14%

Region	Type	From	To	Most similar known cluster	Similarity
Region 4.1	arylpolyene	110	40,292
Region 12.1	terpene	11,162	34,731	carotenoid	Terpene	100%
Region 12.2	NRPS	260,652	304,518	turnerbactin	NRP	30%
Region 29.1	ladderane	1	22,441
Region 32.1	thiopeptide	128,854	155,154	O-antigen	Saccharide	14%

No secondary metabolite regions were found in these records:: JAGFMA010000001 (original name was: JAGFMA010000001.1); JAGFMA010000010 (original name was: JAGFMA010000010.1); JAGFMA010000011 (original name was: JAGFMA010000011.1); JAGFMA010000013 (original name was: JAGFMA010000013.1); JAGFMA010000014 (original name was: JAGFMA010000014.1); JAGFMA010000015 (original name was: JAGFMA010000015.1); JAGFMA010000016 (original name was: JAGFMA010000016.1); JAGFMA010000017 (original name was: JAGFMA010000017.1); JAGFMA010000018 (original name was: JAGFMA010000018.1); JAGFMA010000019 (original name was: JAGFMA010000019.1); JAGFMA010000020 (original name was: JAGFMA010000020.1); JAGFMA010000021 (original name was: JAGFMA010000021.1); JAGFMA010000022 (original name was: JAGFMA010000022.1); JAGFMA010000023 (original name was: JAGFMA010000023.1); JAGFMA010000024 (original name was: JAGFMA010000024.1); JAGFMA010000025 (original name was: JAGFMA010000025.1); JAGFMA010000026 (original name was: JAGFMA010000026.1); JAGFMA010000027 (original name was: JAGFMA010000027.1); JAGFMA010000028 (original name was: JAGFMA010000028.1); JAGFMA010000029 (original name was: JAGFMA010000029.1); JAGFMA010000003 (original name was: JAGFMA010000003.1); JAGFMA010000030 (original name was: JAGFMA010000030.1); JAGFMA010000031 (original name was: JAGFMA010000031.1); JAGFMA010000032 (original name was: JAGFMA010000032.1); JAGFMA010000033 (original name was: JAGFMA010000033.1); JAGFMA010000004 (original name was: JAGFMA010000004.1); JAGFMA010000006 (original name was: JAGFMA010000006.1); JAGFMA010000007 (original name was: JAGFMA010000007.1); JAGFMA010000009 (original name was: JAGFMA010000009.1)

Compact view

c00004_JAGFMA0.. - Region 1 - arylpolyene

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Location: 110 - 40,292 nt. (total: 40,183 nt) Show pHMM detection rules used

arylpolyene: (APE_KS1 or APE_KS2)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

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KnownClusterBlast

Similar known gene clusters

No matches found.

c00012_JAGFMA0.. - Region 1 - terpene

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Location: 11,162 - 34,731 nt. (total: 23,570 nt) Show pHMM detection rules used

terpene: (Terpene_synth or Terpene_synth_C or phytoene_synt or Lycopene_cycl or terpene_cyclase or NapT7 or fung_ggpps or fung_ggpps2 or trichodiene_synth or TRI5)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

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KnownClusterBlast

Similar known gene clusters

c00012_JAGFMA0.. - Region 2 - NRPS

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Location: 260,652 - 304,518 nt. (total: 43,867 nt) Show pHMM detection rules used

NRPS: cds(Condensation and (AMP-binding or A-OX))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

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NRPS/PKS domains

KnownClusterBlast

Detailed domain annotation

Selected features only

Show module domains

Similar known gene clusters

NRPS/PKS products

NRPS/PKS monomers

Predicted core structure(s)

For candidate cluster 2, location 260651 - 304518:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (ser)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS monomer predictions

ctg12_258

Search NORINE for peptide: strict or relaxed

AMP-binding (36..433): dhb

NRPSPredictor2: dhb

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aromatic
Large clusters prediction:: dhb, sal
Small clusters prediction:: dhb, sal
Single AA prediction:: dhb

Stachelhaus prediction details:

Stachelhaus sequence:: aMPSQGVVNK
Nearest Stachelhaus code:: dhb
Stachelhaus code match:: 90% (moderate)

ctg12_266

Search NORINE for peptide: strict or relaxed

AMP-binding (460..860): ser

NRPSPredictor2: ser

SVM prediction details:

NOTE: outside applicability domain

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: ser, thr, dhpg, hpg
Small clusters prediction:: ser
Single AA prediction:: ser

Stachelhaus prediction details:

Stachelhaus sequence:: DVWHFSLVDK
Nearest Stachelhaus code:: ser
Stachelhaus code match:: 100% (strong)

c00029_JAGFMA0.. - Region 1 - ladderane

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Location: 1 - 22,441 nt. (total: 22,441 nt) Show pHMM detection rules used

Region on contig edge.

ladderane: ladderane

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

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KnownClusterBlast

Similar known gene clusters

No matches found.

c00032_JAGFMA0.. - Region 1 - thiopeptide

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Location: 128,854 - 155,154 nt. (total: 26,301 nt) Show pHMM detection rules used

thiopeptide: ((YcaO or TIGR03882) and ((thio_amide and (PF06968 or PF04055 or PF07366)) or Lant_dehydr_C or Lant_dehydr_N or PF07366 or PF06968 or PF04055) or thiostrepton)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

Select a gene to view the details available for it

Thiopeptides

KnownClusterBlast

Thiopeptide predictions

No core peptides found.

Similar known gene clusters

Thiopeptides

Core peptide predictions

No core peptides found.