GCA_022134905.1 - 3 region(s)

Identified primary metabolite regions

JAKNHM010000021 (original name was: JAKNHM010000021.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 14.1	Fumarate2succinate	SCFA	1	22,382

JAKNHM010000025 (original name was: JAKNHM010000025.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 18.1	Pyruvate2acetate-formate	SCFA	2,356	24,395	Pyruvate to acetate-formate E. coli	PFL_acetate	100%

JAKNHM010000005 (original name was: JAKNHM010000005.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 34.1	Others_HGD_unassigned	Putative	109,192	131,354

Region	Type	Class	From	To	Most similar known cluster	Similarity
Region 14.1	Fumarate2succinate	SCFA	1	22,382
Region 18.1	Pyruvate2acetate-formate	SCFA	2,356	24,395	Pyruvate to acetate-formate E. coli	PFL_acetate	100%
Region 34.1	Others_HGD_unassigned	Putative	109,192	131,354

No primary metabolite regions were found in these records:: JAKNHM010000001 (original name was: JAKNHM010000001.1); JAKNHM010000010 (original name was: JAKNHM010000010.1); JAKNHM010000011 (original name was: JAKNHM010000011.1); JAKNHM010000012 (original name was: JAKNHM010000012.1); JAKNHM010000013 (original name was: JAKNHM010000013.1); JAKNHM010000014 (original name was: JAKNHM010000014.1); JAKNHM010000015 (original name was: JAKNHM010000015.1); JAKNHM010000016 (original name was: JAKNHM010000016.1); JAKNHM010000017 (original name was: JAKNHM010000017.1); JAKNHM010000018 (original name was: JAKNHM010000018.1); JAKNHM010000019 (original name was: JAKNHM010000019.1); JAKNHM010000002 (original name was: JAKNHM010000002.1); JAKNHM010000020 (original name was: JAKNHM010000020.1); JAKNHM010000022 (original name was: JAKNHM010000022.1); JAKNHM010000023 (original name was: JAKNHM010000023.1); JAKNHM010000024 (original name was: JAKNHM010000024.1); JAKNHM010000026 (original name was: JAKNHM010000026.1); JAKNHM010000027 (original name was: JAKNHM010000027.1); JAKNHM010000028 (original name was: JAKNHM010000028.1); JAKNHM010000029 (original name was: JAKNHM010000029.1); JAKNHM010000003 (original name was: JAKNHM010000003.1); JAKNHM010000030 (original name was: JAKNHM010000030.1); JAKNHM010000031 (original name was: JAKNHM010000031.1); JAKNHM010000032 (original name was: JAKNHM010000032.1); JAKNHM010000033 (original name was: JAKNHM010000033.1); JAKNHM010000034 (original name was: JAKNHM010000034.1); JAKNHM010000035 (original name was: JAKNHM010000035.1); JAKNHM010000036 (original name was: JAKNHM010000036.1); JAKNHM010000037 (original name was: JAKNHM010000037.1); JAKNHM010000038 (original name was: JAKNHM010000038.1); JAKNHM010000004 (original name was: JAKNHM010000004.1); JAKNHM010000006 (original name was: JAKNHM010000006.1); JAKNHM010000007 (original name was: JAKNHM010000007.1); JAKNHM010000008 (original name was: JAKNHM010000008.1); JAKNHM010000009 (original name was: JAKNHM010000009.1)

Compact view

c00014_JAKNHM0.. - Region 1 - Fumarate2succinate

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Location: 1 - 22,382 nt. (total: 22,382 nt) Show pHMM detection rules used

Region on contig edge.

Fumarate2succinate: (Succ_DH_flav_C and FAD_binding_2 and (Fer2_3 or Fer4_7 or SucD_FumR))

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core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

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Gene details

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KnownClusterBlast

Similar known gene clusters

No matches found.

c00018_JAKNHM0.. - Region 1 - Pyruvate2acetate-formate

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Location: 2,356 - 24,395 nt. (total: 22,040 nt) Show pHMM detection rules used

Region on contig edge.

Pyruvate2acetate-formate: ((PFL_acetate1 or PFL_acetate2) and Radical_SAM)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

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Gene details

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KnownClusterBlast

Similar known gene clusters

c00034_JAKNHM0.. - Region 1 - Others_HGD_unassigned

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Location: 109,192 - 131,354 nt. (total: 22,163 nt) Show pHMM detection rules used

Region on contig edge.

Others_HGD_unassigned: (minimum(1, [HAAA1, HG2B1, HG2B2, HGD-D, HleuD1, HleuD2, HleuS1, HleuS2, Lactoyl-CoA1, Lactoyl-CoA2]) and minimum(1, [ACP_syn_III, ACP_syn_III_C, AcetylCoA_hyd_C, AcetylCoA_hydro, Acyl-CoA_dh_1, Acyl-CoA_dh_2, AdoHcyase_NAD, AlaDh_PNT_C, BcrAD_BadFG, Biotin_lipoyl, Carboxyl_trans, CoA_trans, CoA_trans_230_acto, CoA_trans_6_Glutaconate, CoA_transf_3, ECH_1, ECH_2, ETF, ETF_alpha, FGGY_C, HCDH, HCDH_N, Hacid_dh, Hacid_dh_C, Mal_decarbox_Al, Peptidase_M22, Peptidase_M23, Thiolase_C, Thiolase_N, ketoacyl-synt]) and not (minimum(2, [AcetylCoA_hyd_C, BcrAD_BadFG, CoA_trans, CoA_trans_230_acto, Mal_decarbox_Al]) and Lactoyl-CoA2 and Lactoyl-CoA1) and not (minimum(4, [ACP_syn_III, ACP_syn_III_C, Acyl-CoA_dh_1, Acyl-CoA_dh_2, AlaDh_PNT_C, BcrAD_BadFG, ECH_1, ECH_2, ETF, ETF_alpha, HCDH, HCDH_N, Hacid_dh, Hacid_dh_C, IlvN, NAD_Gly3P_dh_N, Thiolase_C, Thiolase_N, ketoacyl-synt]) and HAAA1 and not HleuS1))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

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Gene details

Select a gene to view the details available for it

KnownClusterBlast

Similar known gene clusters

No matches found.