GCA_022484385.1 - 3 region(s)

Identified primary metabolite regions

JAKVLL010000002 (original name was: JAKVLL010000002.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 2.1	Pyruvate2acetate-formate	SCFA	37,072	60,316	Pyruvate to acetate-formate E. coli	PFL_acetate	100%

JAKVLL010000011 (original name was: JAKVLL010000011.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 11.1	TPP_AA_metabolism	Putative	5,804	37,939

JAKVLL010000022 (original name was: JAKVLL010000022.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 22.1	TPP_fatty_acids	Putative	1	16,462

No primary metabolite regions were found in these records:: JAKVLL010000001 (original name was: JAKVLL010000001.1); JAKVLL010000003 (original name was: JAKVLL010000003.1); JAKVLL010000004 (original name was: JAKVLL010000004.1); JAKVLL010000005 (original name was: JAKVLL010000005.1); JAKVLL010000006 (original name was: JAKVLL010000006.1); JAKVLL010000007 (original name was: JAKVLL010000007.1); JAKVLL010000008 (original name was: JAKVLL010000008.1); JAKVLL010000009 (original name was: JAKVLL010000009.1); JAKVLL010000010 (original name was: JAKVLL010000010.1); JAKVLL010000012 (original name was: JAKVLL010000012.1); JAKVLL010000013 (original name was: JAKVLL010000013.1); JAKVLL010000014 (original name was: JAKVLL010000014.1); JAKVLL010000015 (original name was: JAKVLL010000015.1); JAKVLL010000016 (original name was: JAKVLL010000016.1); JAKVLL010000017 (original name was: JAKVLL010000017.1); JAKVLL010000018 (original name was: JAKVLL010000018.1); JAKVLL010000019 (original name was: JAKVLL010000019.1); JAKVLL010000020 (original name was: JAKVLL010000020.1); JAKVLL010000021 (original name was: JAKVLL010000021.1); JAKVLL010000023 (original name was: JAKVLL010000023.1); JAKVLL010000024 (original name was: JAKVLL010000024.1); JAKVLL010000025 (original name was: JAKVLL010000025.1); JAKVLL010000026 (original name was: JAKVLL010000026.1); JAKVLL010000027 (original name was: JAKVLL010000027.1); JAKVLL010000028 (original name was: JAKVLL010000028.1); JAKVLL010000029 (original name was: JAKVLL010000029.1); JAKVLL010000030 (original name was: JAKVLL010000030.1); JAKVLL010000031 (original name was: JAKVLL010000031.1); JAKVLL010000032 (original name was: JAKVLL010000032.1); JAKVLL010000033 (original name was: JAKVLL010000033.1); JAKVLL010000034 (original name was: JAKVLL010000034.1); JAKVLL010000035 (original name was: JAKVLL010000035.1); JAKVLL010000036 (original name was: JAKVLL010000036.1); JAKVLL010000037 (original name was: JAKVLL010000037.1); JAKVLL010000038 (original name was: JAKVLL010000038.1); JAKVLL010000039 (original name was: JAKVLL010000039.1); JAKVLL010000040 (original name was: JAKVLL010000040.1); JAKVLL010000041 (original name was: JAKVLL010000041.1); JAKVLL010000042 (original name was: JAKVLL010000042.1); JAKVLL010000043 (original name was: JAKVLL010000043.1); JAKVLL010000044 (original name was: JAKVLL010000044.1); JAKVLL010000045 (original name was: JAKVLL010000045.1); JAKVLL010000046 (original name was: JAKVLL010000046.1); JAKVLL010000047 (original name was: JAKVLL010000047.1); JAKVLL010000048 (original name was: JAKVLL010000048.1); JAKVLL010000049 (original name was: JAKVLL010000049.1); JAKVLL010000050 (original name was: JAKVLL010000050.1); JAKVLL010000051 (original name was: JAKVLL010000051.1); JAKVLL010000052 (original name was: JAKVLL010000052.1); JAKVLL010000053 (original name was: JAKVLL010000053.1); JAKVLL010000054 (original name was: JAKVLL010000054.1); JAKVLL010000055 (original name was: JAKVLL010000055.1); JAKVLL010000056 (original name was: JAKVLL010000056.1); JAKVLL010000057 (original name was: JAKVLL010000057.1); JAKVLL010000058 (original name was: JAKVLL010000058.1); JAKVLL010000059 (original name was: JAKVLL010000059.1); JAKVLL010000060 (original name was: JAKVLL010000060.1); JAKVLL010000061 (original name was: JAKVLL010000061.1)

Compact view

c00002_JAKVLL0.. - Region 1 - Pyruvate2acetate-formate

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Location: 37,072 - 60,316 nt. (total: 23,245 nt) Show pHMM detection rules used

Pyruvate2acetate-formate: ((PFL_acetate1 or PFL_acetate2) and Radical_SAM)

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core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

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Gene details

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KnownClusterBlast

Similar known gene clusters

c00011_JAKVLL0.. - Region 1 - TPP_AA_metabolism

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Location: 5,804 - 37,939 nt. (total: 32,136 nt) Show pHMM detection rules used

TPP_AA_metabolism: (TPP_enzyme_C and not (PFL-like or PFL_6_pcresol or PFL_9_tma or Gly_radical or Gly_430_pcre or Gly_8-9_TMA or PFL_acetate1 or PFL_acetate2 or Gly_radical_scatole or PFL_proline or PFL_toluene) and minimum(2, [ALS_ss_C, AlaDh_PNT_C, Arginase, BKACE, BcrAD_BadFG, Beta_elim_lyase, CPSase_L_D2, Cys_Met_Meta_PP, ELFV_dehydrog, GRDB, Glu_syn_central, Glu_synthase, Gly_reductase, HAAA1, HG2B1, HG2B2, HGD-D, HleuD1, HleuD2, HleuS1, HleuS2, Homoserine_dh, ILVD_EDD, IlvC, Lactoyl-CoA1, Lactoyl-CoA2, Lyase_aromatic, MAAL_C, OKR_DC_1_5_lysine, OKR_DC_1_5_ornithine, OKR_DC_1_7_arginine, OKR_DC_1_C, OTCace, PALP, Proline_reductase, Sacchrp_dh_C, TPL, Thr_dehydrat_C, TnaA, Urocanase]) and not (POR or POR_N or PFOR_II))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

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Gene details

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KnownClusterBlast

Similar known gene clusters

No matches found.

c00022_JAKVLL0.. - Region 1 - TPP_fatty_acids

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Location: 1 - 16,462 nt. (total: 16,462 nt) Show pHMM detection rules used

Region on contig edge.

TPP_fatty_acids: (TPP_enzyme_C and (minimum(2, [ACD1_car, ACP_syn_III_C, AcetylCoA_hyd_C, AcetylCoA_hydro, Acyl-CoA_dh_1, Acyl-CoA_dh_2, Butyrate_kinase, CT_Propionyl_CoA1, CT_Propionyl_CoA2, CT_Propionyl_CoA3, Carboxyl_trans, CoA_trans, CoA_trans_230_acto, CoA_trans_2_CAF, CoA_trans_6_Glutaconate, E1_dh, ECH_1, ECH_2, HBT, HBT_2, HCDH, HpaB, Ketoacyl-synt_C, Thiolase_C, Thiolase_N, adh_short, adh_short_C2]) or FA_synthesis) and not (PFL-like or PFL_6_pcresol or PFL_9_tma or Gly_radical or Gly_430_pcre or PFL_acetate1 or PFL_acetate2 or Gly_radical_scatole or PFL_proline or PFL_toluene) and not (POR or POR_N))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

reset view

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Gene details

Select a gene to view the details available for it

KnownClusterBlast

Similar known gene clusters

No matches found.