GCA_022717235.1 - 3 region(s)

Identified primary metabolite regions

JAIIBI010000004 (original name was: JAIIBI010000004.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 29.1	Pyruvate2acetate-formate	SCFA	1	17,127	Pyruvate to acetate-formate E. coli	PFL_acetate	100%

JAIIBI010000032 (original name was: JAIIBI010000032.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 68.1	Fumarate2succinate	SCFA	2,504	20,544	Fumarate2succinate suc dh E. coli	SUC	100%

JAIIBI010000009 (original name was: JAIIBI010000009.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 69.1	Others_HGD_unassigned	Putative	15,595	40,353

No primary metabolite regions were found in these records:: JAIIBI010000081 (original name was: JAIIBI010000081.1); JAIIBI010000082 (original name was: JAIIBI010000082.1); JAIIBI010000043 (original name was: JAIIBI010000043.1); JAIIBI010000083 (original name was: JAIIBI010000083.1); JAIIBI010000044 (original name was: JAIIBI010000044.1); JAIIBI010000013 (original name was: JAIIBI010000013.1); JAIIBI010000045 (original name was: JAIIBI010000045.1); JAIIBI010000046 (original name was: JAIIBI010000046.1); JAIIBI010000014 (original name was: JAIIBI010000014.1); JAIIBI010000015 (original name was: JAIIBI010000015.1); JAIIBI010000047 (original name was: JAIIBI010000047.1); JAIIBI010000084 (original name was: JAIIBI010000084.1); JAIIBI010000085 (original name was: JAIIBI010000085.1); JAIIBI010000016 (original name was: JAIIBI010000016.1); JAIIBI010000017 (original name was: JAIIBI010000017.1); JAIIBI010000018 (original name was: JAIIBI010000018.1); JAIIBI010000019 (original name was: JAIIBI010000019.1); JAIIBI010000020 (original name was: JAIIBI010000020.1); JAIIBI010000086 (original name was: JAIIBI010000086.1); JAIIBI010000048 (original name was: JAIIBI010000048.1); JAIIBI010000002 (original name was: JAIIBI010000002.1); JAIIBI010000049 (original name was: JAIIBI010000049.1); JAIIBI010000050 (original name was: JAIIBI010000050.1); JAIIBI010000087 (original name was: JAIIBI010000087.1); JAIIBI010000051 (original name was: JAIIBI010000051.1); JAIIBI010000088 (original name was: JAIIBI010000088.1); JAIIBI010000089 (original name was: JAIIBI010000089.1); JAIIBI010000003 (original name was: JAIIBI010000003.1); JAIIBI010000052 (original name was: JAIIBI010000052.1); JAIIBI010000021 (original name was: JAIIBI010000021.1); JAIIBI010000053 (original name was: JAIIBI010000053.1); JAIIBI010000090 (original name was: JAIIBI010000090.1); JAIIBI010000054 (original name was: JAIIBI010000054.1); JAIIBI010000055 (original name was: JAIIBI010000055.1); JAIIBI010000091 (original name was: JAIIBI010000091.1); JAIIBI010000056 (original name was: JAIIBI010000056.1); JAIIBI010000005 (original name was: JAIIBI010000005.1); JAIIBI010000022 (original name was: JAIIBI010000022.1); JAIIBI010000057 (original name was: JAIIBI010000057.1); JAIIBI010000023 (original name was: JAIIBI010000023.1); JAIIBI010000058 (original name was: JAIIBI010000058.1); JAIIBI010000059 (original name was: JAIIBI010000059.1); JAIIBI010000060 (original name was: JAIIBI010000060.1); JAIIBI010000061 (original name was: JAIIBI010000061.1); JAIIBI010000062 (original name was: JAIIBI010000062.1); JAIIBI010000024 (original name was: JAIIBI010000024.1); JAIIBI010000025 (original name was: JAIIBI010000025.1); JAIIBI010000006 (original name was: JAIIBI010000006.1); JAIIBI010000063 (original name was: JAIIBI010000063.1); JAIIBI010000064 (original name was: JAIIBI010000064.1); JAIIBI010000026 (original name was: JAIIBI010000026.1); JAIIBI010000065 (original name was: JAIIBI010000065.1); JAIIBI010000066 (original name was: JAIIBI010000066.1); JAIIBI010000027 (original name was: JAIIBI010000027.1); JAIIBI010000067 (original name was: JAIIBI010000067.1); JAIIBI010000028 (original name was: JAIIBI010000028.1); JAIIBI010000068 (original name was: JAIIBI010000068.1); JAIIBI010000007 (original name was: JAIIBI010000007.1); JAIIBI010000029 (original name was: JAIIBI010000029.1); JAIIBI010000069 (original name was: JAIIBI010000069.1); JAIIBI010000030 (original name was: JAIIBI010000030.1); JAIIBI010000070 (original name was: JAIIBI010000070.1); JAIIBI010000031 (original name was: JAIIBI010000031.1); JAIIBI010000071 (original name was: JAIIBI010000071.1); JAIIBI010000072 (original name was: JAIIBI010000072.1); JAIIBI010000008 (original name was: JAIIBI010000008.1); JAIIBI010000010 (original name was: JAIIBI010000010.1); JAIIBI010000033 (original name was: JAIIBI010000033.1); JAIIBI010000011 (original name was: JAIIBI010000011.1); JAIIBI010000073 (original name was: JAIIBI010000073.1); JAIIBI010000034 (original name was: JAIIBI010000034.1); JAIIBI010000074 (original name was: JAIIBI010000074.1); JAIIBI010000012 (original name was: JAIIBI010000012.1); JAIIBI010000075 (original name was: JAIIBI010000075.1); JAIIBI010000076 (original name was: JAIIBI010000076.1); JAIIBI010000035 (original name was: JAIIBI010000035.1); JAIIBI010000077 (original name was: JAIIBI010000077.1); JAIIBI010000036 (original name was: JAIIBI010000036.1); JAIIBI010000037 (original name was: JAIIBI010000037.1); JAIIBI010000078 (original name was: JAIIBI010000078.1); JAIIBI010000079 (original name was: JAIIBI010000079.1); JAIIBI010000038 (original name was: JAIIBI010000038.1); JAIIBI010000039 (original name was: JAIIBI010000039.1); JAIIBI010000040 (original name was: JAIIBI010000040.1); JAIIBI010000080 (original name was: JAIIBI010000080.1); JAIIBI010000001 (original name was: JAIIBI010000001.1); JAIIBI010000041 (original name was: JAIIBI010000041.1); JAIIBI010000042 (original name was: JAIIBI010000042.1)

Compact view

c00029_JAIIBI0.. - Region 1 - Pyruvate2acetate-formate

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Location: 1 - 17,127 nt. (total: 17,127 nt) Show pHMM detection rules used

Region on contig edge.

Pyruvate2acetate-formate: ((PFL_acetate1 or PFL_acetate2) and Radical_SAM)

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core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

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c00068_JAIIBI0.. - Region 1 - Fumarate2succinate

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Location: 2,504 - 20,544 nt. (total: 18,041 nt) Show pHMM detection rules used

Region on contig edge.

Fumarate2succinate: (Succ_DH_flav_C and FAD_binding_2 and (Fer2_3 or Fer4_7 or SucD_FumR))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

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Gene details

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KnownClusterBlast

Similar known gene clusters

c00069_JAIIBI0.. - Region 1 - Others_HGD_unassigned

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Location: 15,595 - 40,353 nt. (total: 24,759 nt) Show pHMM detection rules used

Others_HGD_unassigned: (minimum(1, [HAAA1, HG2B1, HG2B2, HGD-D, HleuD1, HleuD2, HleuS1, HleuS2, Lactoyl-CoA1, Lactoyl-CoA2]) and minimum(1, [ACP_syn_III, ACP_syn_III_C, AcetylCoA_hyd_C, AcetylCoA_hydro, Acyl-CoA_dh_1, Acyl-CoA_dh_2, AdoHcyase_NAD, AlaDh_PNT_C, BcrAD_BadFG, Biotin_lipoyl, Carboxyl_trans, CoA_trans, CoA_trans_230_acto, CoA_trans_6_Glutaconate, CoA_transf_3, ECH_1, ECH_2, ETF, ETF_alpha, FGGY_C, HCDH, HCDH_N, Hacid_dh, Hacid_dh_C, Mal_decarbox_Al, Peptidase_M22, Peptidase_M23, Thiolase_C, Thiolase_N, ketoacyl-synt]) and not (minimum(2, [AcetylCoA_hyd_C, BcrAD_BadFG, CoA_trans, CoA_trans_230_acto, Mal_decarbox_Al]) and Lactoyl-CoA2 and Lactoyl-CoA1) and not (minimum(4, [ACP_syn_III, ACP_syn_III_C, Acyl-CoA_dh_1, Acyl-CoA_dh_2, AlaDh_PNT_C, BcrAD_BadFG, ECH_1, ECH_2, ETF, ETF_alpha, HCDH, HCDH_N, Hacid_dh, Hacid_dh_C, IlvN, NAD_Gly3P_dh_N, Thiolase_C, Thiolase_N, ketoacyl-synt]) and HAAA1 and not HleuS1))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

reset view

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Gene details

Select a gene to view the details available for it

KnownClusterBlast

Similar known gene clusters

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