GCA_022743665.1 - 3 region(s)

Identified primary metabolite regions

JAIIIA010000005 (original name was: JAIIIA010000005.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 2.1	Fumarate2succinate	SCFA	12,168	34,988	Fumarate2succinate suc dh E. coli	SUC	100%

JAIIIA010000009 (original name was: JAIIIA010000009.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 16.1	Others_HGD_unassigned	Putative	9,444	34,202

JAIIIA010000012 (original name was: JAIIIA010000012.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 23.1	Pyruvate2acetate-formate	SCFA	51,093	74,469	Pyruvate to acetate-formate E. coli	PFL_acetate	100%

No primary metabolite regions were found in these records:: JAIIIA010000001 (original name was: JAIIIA010000001.1); JAIIIA010000024 (original name was: JAIIIA010000024.1); JAIIIA010000006 (original name was: JAIIIA010000006.1); JAIIIA010000025 (original name was: JAIIIA010000025.1); JAIIIA010000037 (original name was: JAIIIA010000037.1); JAIIIA010000026 (original name was: JAIIIA010000026.1); JAIIIA010000007 (original name was: JAIIIA010000007.1); JAIIIA010000027 (original name was: JAIIIA010000027.1); JAIIIA010000008 (original name was: JAIIIA010000008.1); JAIIIA010000028 (original name was: JAIIIA010000028.1); JAIIIA010000038 (original name was: JAIIIA010000038.1); JAIIIA010000029 (original name was: JAIIIA010000029.1); JAIIIA010000039 (original name was: JAIIIA010000039.1); JAIIIA010000040 (original name was: JAIIIA010000040.1); JAIIIA010000030 (original name was: JAIIIA010000030.1); JAIIIA010000031 (original name was: JAIIIA010000031.1); JAIIIA010000010 (original name was: JAIIIA010000010.1); JAIIIA010000011 (original name was: JAIIIA010000011.1); JAIIIA010000041 (original name was: JAIIIA010000041.1); JAIIIA010000042 (original name was: JAIIIA010000042.1); JAIIIA010000032 (original name was: JAIIIA010000032.1); JAIIIA010000033 (original name was: JAIIIA010000033.1); JAIIIA010000043 (original name was: JAIIIA010000043.1); JAIIIA010000034 (original name was: JAIIIA010000034.1); JAIIIA010000044 (original name was: JAIIIA010000044.1); JAIIIA010000013 (original name was: JAIIIA010000013.1); JAIIIA010000014 (original name was: JAIIIA010000014.1); JAIIIA010000015 (original name was: JAIIIA010000015.1); JAIIIA010000002 (original name was: JAIIIA010000002.1); JAIIIA010000016 (original name was: JAIIIA010000016.1); JAIIIA010000045 (original name was: JAIIIA010000045.1); JAIIIA010000035 (original name was: JAIIIA010000035.1); JAIIIA010000003 (original name was: JAIIIA010000003.1); JAIIIA010000017 (original name was: JAIIIA010000017.1); JAIIIA010000018 (original name was: JAIIIA010000018.1); JAIIIA010000019 (original name was: JAIIIA010000019.1); JAIIIA010000046 (original name was: JAIIIA010000046.1); JAIIIA010000004 (original name was: JAIIIA010000004.1); JAIIIA010000047 (original name was: JAIIIA010000047.1); JAIIIA010000048 (original name was: JAIIIA010000048.1); JAIIIA010000049 (original name was: JAIIIA010000049.1); JAIIIA010000020 (original name was: JAIIIA010000020.1); JAIIIA010000050 (original name was: JAIIIA010000050.1); JAIIIA010000051 (original name was: JAIIIA010000051.1); JAIIIA010000021 (original name was: JAIIIA010000021.1); JAIIIA010000052 (original name was: JAIIIA010000052.1); JAIIIA010000022 (original name was: JAIIIA010000022.1); JAIIIA010000053 (original name was: JAIIIA010000053.1); JAIIIA010000036 (original name was: JAIIIA010000036.1); JAIIIA010000054 (original name was: JAIIIA010000054.1); JAIIIA010000055 (original name was: JAIIIA010000055.1); JAIIIA010000023 (original name was: JAIIIA010000023.1); JAIIIA010000056 (original name was: JAIIIA010000056.1)

Compact view

c00002_JAIIIA0.. - Region 1 - Fumarate2succinate

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Location: 12,168 - 34,988 nt. (total: 22,821 nt) Show pHMM detection rules used

Fumarate2succinate: (Succ_DH_flav_C and FAD_binding_2 and (Fer2_3 or Fer4_7 or SucD_FumR))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

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Gene details

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KnownClusterBlast

Similar known gene clusters

c00016_JAIIIA0.. - Region 1 - Others_HGD_unassigned

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Location: 9,444 - 34,202 nt. (total: 24,759 nt) Show pHMM detection rules used

Others_HGD_unassigned: (minimum(1, [HAAA1, HG2B1, HG2B2, HGD-D, HleuD1, HleuD2, HleuS1, HleuS2, Lactoyl-CoA1, Lactoyl-CoA2]) and minimum(1, [ACP_syn_III, ACP_syn_III_C, AcetylCoA_hyd_C, AcetylCoA_hydro, Acyl-CoA_dh_1, Acyl-CoA_dh_2, AdoHcyase_NAD, AlaDh_PNT_C, BcrAD_BadFG, Biotin_lipoyl, Carboxyl_trans, CoA_trans, CoA_trans_230_acto, CoA_trans_6_Glutaconate, CoA_transf_3, ECH_1, ECH_2, ETF, ETF_alpha, FGGY_C, HCDH, HCDH_N, Hacid_dh, Hacid_dh_C, Mal_decarbox_Al, Peptidase_M22, Peptidase_M23, Thiolase_C, Thiolase_N, ketoacyl-synt]) and not (minimum(2, [AcetylCoA_hyd_C, BcrAD_BadFG, CoA_trans, CoA_trans_230_acto, Mal_decarbox_Al]) and Lactoyl-CoA2 and Lactoyl-CoA1) and not (minimum(4, [ACP_syn_III, ACP_syn_III_C, Acyl-CoA_dh_1, Acyl-CoA_dh_2, AlaDh_PNT_C, BcrAD_BadFG, ECH_1, ECH_2, ETF, ETF_alpha, HCDH, HCDH_N, Hacid_dh, Hacid_dh_C, IlvN, NAD_Gly3P_dh_N, Thiolase_C, Thiolase_N, ketoacyl-synt]) and HAAA1 and not HleuS1))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

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Gene details

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KnownClusterBlast

Similar known gene clusters

No matches found.

c00023_JAIIIA0.. - Region 1 - Pyruvate2acetate-formate

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Location: 51,093 - 74,469 nt. (total: 23,377 nt) Show pHMM detection rules used

Pyruvate2acetate-formate: ((PFL_acetate1 or PFL_acetate2) and Radical_SAM)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

KnownClusterBlast

Similar known gene clusters