GCA_901830405.1 - 4 region(s)

Identified primary metabolite regions

CABFKY010000001 (original name was: CABFKY010000001.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 1.1	Pyruvate2acetate-formate	SCFA	173,324	196,574	Pyruvate to acetate-formate E. coli	PFL_acetate	100%

CABFKY010000056 (original name was: CABFKY010000056.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 34.1	gallic_acid_met	Aromatic	136,177	158,234	Gallic acid degradation B. sp. KLE	GALL	100%

CABFKY010000067 (original name was: CABFKY010000067.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 45.1	TPP_fatty_acids	Putative	43,195	69,120

CABFKY010000089 (original name was: CABFKY010000089.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 56.1	TPP_AA_metabolism	Putative	1	26,435

No primary metabolite regions were found in these records:: CABFKY010000002 (original name was: CABFKY010000002.1); CABFKY010000013 (original name was: CABFKY010000013.1); CABFKY010000024 (original name was: CABFKY010000024.1); CABFKY010000027 (original name was: CABFKY010000027.1); CABFKY010000028 (original name was: CABFKY010000028.1); CABFKY010000029 (original name was: CABFKY010000029.1); CABFKY010000030 (original name was: CABFKY010000030.1); CABFKY010000031 (original name was: CABFKY010000031.1); CABFKY010000032 (original name was: CABFKY010000032.1); CABFKY010000033 (original name was: CABFKY010000033.1); CABFKY010000034 (original name was: CABFKY010000034.1); CABFKY010000035 (original name was: CABFKY010000035.1); CABFKY010000036 (original name was: CABFKY010000036.1); CABFKY010000037 (original name was: CABFKY010000037.1); CABFKY010000038 (original name was: CABFKY010000038.1); CABFKY010000039 (original name was: CABFKY010000039.1); CABFKY010000040 (original name was: CABFKY010000040.1); CABFKY010000041 (original name was: CABFKY010000041.1); CABFKY010000042 (original name was: CABFKY010000042.1); CABFKY010000043 (original name was: CABFKY010000043.1); CABFKY010000044 (original name was: CABFKY010000044.1); CABFKY010000045 (original name was: CABFKY010000045.1); CABFKY010000046 (original name was: CABFKY010000046.1); CABFKY010000047 (original name was: CABFKY010000047.1); CABFKY010000048 (original name was: CABFKY010000048.1); CABFKY010000049 (original name was: CABFKY010000049.1); CABFKY010000050 (original name was: CABFKY010000050.1); CABFKY010000051 (original name was: CABFKY010000051.1); CABFKY010000052 (original name was: CABFKY010000052.1); CABFKY010000053 (original name was: CABFKY010000053.1); CABFKY010000054 (original name was: CABFKY010000054.1); CABFKY010000055 (original name was: CABFKY010000055.1); CABFKY010000057 (original name was: CABFKY010000057.1); CABFKY010000058 (original name was: CABFKY010000058.1); CABFKY010000059 (original name was: CABFKY010000059.1); CABFKY010000060 (original name was: CABFKY010000060.1); CABFKY010000061 (original name was: CABFKY010000061.1); CABFKY010000062 (original name was: CABFKY010000062.1); CABFKY010000063 (original name was: CABFKY010000063.1); CABFKY010000064 (original name was: CABFKY010000064.1); CABFKY010000065 (original name was: CABFKY010000065.1); CABFKY010000066 (original name was: CABFKY010000066.1); CABFKY010000068 (original name was: CABFKY010000068.1); CABFKY010000069 (original name was: CABFKY010000069.1); CABFKY010000070 (original name was: CABFKY010000070.1); CABFKY010000071 (original name was: CABFKY010000071.1); CABFKY010000072 (original name was: CABFKY010000072.1); CABFKY010000073 (original name was: CABFKY010000073.1); CABFKY010000074 (original name was: CABFKY010000074.1); CABFKY010000075 (original name was: CABFKY010000075.1); CABFKY010000076 (original name was: CABFKY010000076.1); CABFKY010000078 (original name was: CABFKY010000078.1); CABFKY010000100 (original name was: CABFKY010000100.1); CABFKY010000111 (original name was: CABFKY010000111.1)

Compact view

c00001_CABFKY0.. - Region 1 - Pyruvate2acetate-formate

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Location: 173,324 - 196,574 nt. (total: 23,251 nt) Show pHMM detection rules used

Pyruvate2acetate-formate: ((PFL_acetate1 or PFL_acetate2) and Radical_SAM)

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core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

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Gene details

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KnownClusterBlast

Similar known gene clusters

c00034_CABFKY0.. - Region 1 - gallic_acid_met

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Location: 136,177 - 158,234 nt. (total: 22,058 nt) Show pHMM detection rules used

gallic_acid_met: (minimum(1, [Flavoprotein, Semialdhyde_dh]) and gallic_acid)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

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Gene details

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KnownClusterBlast

Similar known gene clusters

c00045_CABFKY0.. - Region 1 - TPP_fatty_acids

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Location: 43,195 - 69,120 nt. (total: 25,926 nt) Show pHMM detection rules used

TPP_fatty_acids: (TPP_enzyme_C and (minimum(2, [ACD1_car, ACP_syn_III_C, AcetylCoA_hyd_C, AcetylCoA_hydro, Acyl-CoA_dh_1, Acyl-CoA_dh_2, Butyrate_kinase, CT_Propionyl_CoA1, CT_Propionyl_CoA2, CT_Propionyl_CoA3, Carboxyl_trans, CoA_trans, CoA_trans_230_acto, CoA_trans_2_CAF, CoA_trans_6_Glutaconate, E1_dh, ECH_1, ECH_2, HBT, HBT_2, HCDH, HpaB, Ketoacyl-synt_C, Thiolase_C, Thiolase_N, adh_short, adh_short_C2]) or FA_synthesis) and not (PFL-like or PFL_6_pcresol or PFL_9_tma or Gly_radical or Gly_430_pcre or PFL_acetate1 or PFL_acetate2 or Gly_radical_scatole or PFL_proline or PFL_toluene) and not (POR or POR_N))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

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Gene details

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KnownClusterBlast

Similar known gene clusters

No matches found.

c00056_CABFKY0.. - Region 1 - TPP_AA_metabolism

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Location: 1 - 26,435 nt. (total: 26,435 nt) Show pHMM detection rules used

Region on contig edge.

TPP_AA_metabolism: (TPP_enzyme_C and not (PFL-like or PFL_6_pcresol or PFL_9_tma or Gly_radical or Gly_430_pcre or Gly_8-9_TMA or PFL_acetate1 or PFL_acetate2 or Gly_radical_scatole or PFL_proline or PFL_toluene) and minimum(2, [ALS_ss_C, AlaDh_PNT_C, Arginase, BKACE, BcrAD_BadFG, Beta_elim_lyase, CPSase_L_D2, Cys_Met_Meta_PP, ELFV_dehydrog, GRDB, Glu_syn_central, Glu_synthase, Gly_reductase, HAAA1, HG2B1, HG2B2, HGD-D, HleuD1, HleuD2, HleuS1, HleuS2, Homoserine_dh, ILVD_EDD, IlvC, Lactoyl-CoA1, Lactoyl-CoA2, Lyase_aromatic, MAAL_C, OKR_DC_1_5_lysine, OKR_DC_1_5_ornithine, OKR_DC_1_7_arginine, OKR_DC_1_C, OTCace, PALP, Proline_reductase, Sacchrp_dh_C, TPL, Thr_dehydrat_C, TnaA, Urocanase]) and not (POR or POR_N or PFOR_II))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

KnownClusterBlast

Similar known gene clusters

No matches found.