GCA_902167595.1 - 2 region(s)

Identified primary metabolite regions

CABHML010000069 (original name was: CABHML010000069.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 55.1	Fumarate2succinate,Pyruvate2acetate-formate	SCFA	58,020	96,755	Pyruvate to acetate-formate E. coli	PFL_acetate	100%

CABHML010000078 (original name was: CABHML010000078.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 63.1	Others_HGD_unassigned	Putative	1	15,420

No primary metabolite regions were found in these records:: CABHML010000001 (original name was: CABHML010000001.1); CABHML010000002 (original name was: CABHML010000002.1); CABHML010000003 (original name was: CABHML010000003.1); CABHML010000004 (original name was: CABHML010000004.1); CABHML010000005 (original name was: CABHML010000005.1); CABHML010000006 (original name was: CABHML010000006.1); CABHML010000007 (original name was: CABHML010000007.1); CABHML010000008 (original name was: CABHML010000008.1); CABHML010000009 (original name was: CABHML010000009.1); CABHML010000012 (original name was: CABHML010000012.1); CABHML010000013 (original name was: CABHML010000013.1); CABHML010000014 (original name was: CABHML010000014.1); CABHML010000016 (original name was: CABHML010000016.1); CABHML010000017 (original name was: CABHML010000017.1); CABHML010000019 (original name was: CABHML010000019.1); CABHML010000020 (original name was: CABHML010000020.1); CABHML010000021 (original name was: CABHML010000021.1); CABHML010000022 (original name was: CABHML010000022.1); CABHML010000023 (original name was: CABHML010000023.1); CABHML010000025 (original name was: CABHML010000025.1); CABHML010000026 (original name was: CABHML010000026.1); CABHML010000027 (original name was: CABHML010000027.1); CABHML010000028 (original name was: CABHML010000028.1); CABHML010000029 (original name was: CABHML010000029.1); CABHML010000031 (original name was: CABHML010000031.1); CABHML010000032 (original name was: CABHML010000032.1); CABHML010000033 (original name was: CABHML010000033.1); CABHML010000034 (original name was: CABHML010000034.1); CABHML010000035 (original name was: CABHML010000035.1); CABHML010000038 (original name was: CABHML010000038.1); CABHML010000039 (original name was: CABHML010000039.1); CABHML010000040 (original name was: CABHML010000040.1); CABHML010000041 (original name was: CABHML010000041.1); CABHML010000042 (original name was: CABHML010000042.1); CABHML010000043 (original name was: CABHML010000043.1); CABHML010000044 (original name was: CABHML010000044.1); CABHML010000045 (original name was: CABHML010000045.1); CABHML010000046 (original name was: CABHML010000046.1); CABHML010000048 (original name was: CABHML010000048.1); CABHML010000049 (original name was: CABHML010000049.1); CABHML010000050 (original name was: CABHML010000050.1); CABHML010000051 (original name was: CABHML010000051.1); CABHML010000052 (original name was: CABHML010000052.1); CABHML010000056 (original name was: CABHML010000056.1); CABHML010000059 (original name was: CABHML010000059.1); CABHML010000060 (original name was: CABHML010000060.1); CABHML010000061 (original name was: CABHML010000061.1); CABHML010000062 (original name was: CABHML010000062.1); CABHML010000063 (original name was: CABHML010000063.1); CABHML010000064 (original name was: CABHML010000064.1); CABHML010000065 (original name was: CABHML010000065.1); CABHML010000066 (original name was: CABHML010000066.1); CABHML010000067 (original name was: CABHML010000067.1); CABHML010000068 (original name was: CABHML010000068.1); CABHML010000070 (original name was: CABHML010000070.1); CABHML010000071 (original name was: CABHML010000071.1); CABHML010000072 (original name was: CABHML010000072.1); CABHML010000073 (original name was: CABHML010000073.1); CABHML010000074 (original name was: CABHML010000074.1); CABHML010000076 (original name was: CABHML010000076.1); CABHML010000077 (original name was: CABHML010000077.1); CABHML010000079 (original name was: CABHML010000079.1); CABHML010000081 (original name was: CABHML010000081.1); CABHML010000082 (original name was: CABHML010000082.1); CABHML010000083 (original name was: CABHML010000083.1); CABHML010000084 (original name was: CABHML010000084.1)

Compact view

c00055_CABHML0.. - Region 1 - Fumarate2succinate,Pyruvate2acetate-formate

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Location: 58,020 - 96,755 nt. (total: 38,736 nt) Show pHMM detection rules used

Fumarate2succinate: (Succ_DH_flav_C and FAD_binding_2 and (Fer2_3 or Fer4_7 or SucD_FumR))
Pyruvate2acetate-formate: ((PFL_acetate1 or PFL_acetate2) and Radical_SAM)

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core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

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Gene details

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KnownClusterBlast

Similar known gene clusters

c00063_CABHML0.. - Region 1 - Others_HGD_unassigned

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Location: 1 - 15,420 nt. (total: 15,420 nt) Show pHMM detection rules used

Region on contig edge.

Others_HGD_unassigned: (minimum(1, [HAAA1, HG2B1, HG2B2, HGD-D, HleuD1, HleuD2, HleuS1, HleuS2, Lactoyl-CoA1, Lactoyl-CoA2]) and minimum(1, [ACP_syn_III, ACP_syn_III_C, AcetylCoA_hyd_C, AcetylCoA_hydro, Acyl-CoA_dh_1, Acyl-CoA_dh_2, AdoHcyase_NAD, AlaDh_PNT_C, BcrAD_BadFG, Biotin_lipoyl, Carboxyl_trans, CoA_trans, CoA_trans_230_acto, CoA_trans_6_Glutaconate, CoA_transf_3, ECH_1, ECH_2, ETF, ETF_alpha, FGGY_C, HCDH, HCDH_N, Hacid_dh, Hacid_dh_C, Mal_decarbox_Al, Peptidase_M22, Peptidase_M23, Thiolase_C, Thiolase_N, ketoacyl-synt]) and not (minimum(2, [AcetylCoA_hyd_C, BcrAD_BadFG, CoA_trans, CoA_trans_230_acto, Mal_decarbox_Al]) and Lactoyl-CoA2 and Lactoyl-CoA1) and not (minimum(4, [ACP_syn_III, ACP_syn_III_C, Acyl-CoA_dh_1, Acyl-CoA_dh_2, AlaDh_PNT_C, BcrAD_BadFG, ECH_1, ECH_2, ETF, ETF_alpha, HCDH, HCDH_N, Hacid_dh, Hacid_dh_C, IlvN, NAD_Gly3P_dh_N, Thiolase_C, Thiolase_N, ketoacyl-synt]) and HAAA1 and not HleuS1))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

KnownClusterBlast

Similar known gene clusters

No matches found.