GCA_902505555.1 - 3 region(s) - antiSMASH results

Identified secondary metabolite regions using strictness 'relaxed'

CABWKI010000008 (original name was: CABWKI010000008.1)

Region	Type	From	To	Most similar known cluster		Similarity
Region 8.1	NRPS	1	10,150

CABWKI010000028 (original name was: CABWKI010000028.1)

Region	Type	From	To	Most similar known cluster		Similarity
Region 19.1	NRPS	160,636	202,543	nosiheptide	RiPP:Thiopeptide	7%

CABWKI010000031 (original name was: CABWKI010000031.1)

Region	Type	From	To	Most similar known cluster		Similarity
Region 22.1	RiPP-like	63,734	74,141

Region	Type	From	To	Most similar known cluster	Similarity
Region 8.1	NRPS	1	10,150
Region 19.1	NRPS	160,636	202,543	nosiheptide	RiPP:Thiopeptide	7%
Region 22.1	RiPP-like	63,734	74,141

Compact view

c00008_CABWKI0.. - Region 1 - NRPS

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Location: 1 - 10,150 nt. (total: 10,150 nt) Show pHMM detection rules used

Region on contig edge.

NRPS: cds(Condensation and (AMP-binding or A-OX))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

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NRPS/PKS domains

KnownClusterBlast

Detailed domain annotation

Selected features only

Show module domains

Similar known gene clusters

No matches found.

NRPS/PKS products

NRPS/PKS monomers

Predicted core structure(s)

For candidate cluster 1, location 0 - 10150:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (thr)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS monomer predictions

ctg8_5

PKS_AT (34..297): mal

ATSignature: Malonyl-CoA

Top 3 matches:: Malonyl-CoA: 62.5%

minowa: Malonyl-CoA

Prediction, score:

Malonyl-CoA: 20.2
inactive: 12.0
trans-1,2-CPDA: 0.0
fatty_acid: 0.0
Propionyl-CoA: 0.0
Methylmalonyl-CoA: 0.0
Methoxymalonyl-CoA: 0.0
Isobutyryl-CoA: 0.0
Ethylmalonyl-CoA: 0.0
CHC-CoA: 0.0
Benzoyl-CoA: 0.0
Acetyl-CoA: 0.0
3-Methylbutyryl-CoA: 0.0
2-Methylbutyryl-CoA: 0.0

ctg8_7

Search NORINE for peptide: strict or relaxed

AMP-binding (438..828): thr

NRPSPredictor2: thr

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: N/A
Small clusters prediction:: thr
Single AA prediction:: thr

Stachelhaus prediction details:

Stachelhaus sequence:: DYWSfGlVlK
Nearest Stachelhaus code:: thr
Stachelhaus code match:: 70% (weak)

c00019_CABWKI0.. - Region 1 - NRPS

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Location: 160,636 - 202,543 nt. (total: 41,908 nt) Show pHMM detection rules used

NRPS: cds(Condensation and (AMP-binding or A-OX))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

NRPS/PKS domains

KnownClusterBlast

Detailed domain annotation

Selected features only

Show module domains

Similar known gene clusters

c00022_CABWKI0.. - Region 1 - RiPP-like

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Location: 63,734 - 74,141 nt. (total: 10,408 nt) Show pHMM detection rules used

RiPP-like: (strepbact or Antimicrobial14 or Bacteriocin_IId or BacteriocIIc_cy or Bacteriocin_II or Bacteriocin_IIi or Lactococcin or Antimicrobial17 or Lactococcin_972 or Bacteriocin_IIc or LcnG-beta or Cloacin or Linocin_M18 or TIGR03651 or TIGR03693 or TIGR03601 or TIGR03795 or TIGR03975 or DUF692 or TIGR01193)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

KnownClusterBlast

Similar known gene clusters

No matches found.