GCA_905131355.1 - 3 region(s)

Identified primary metabolite regions

CAJHQN010000001 (original name was: CAJHQN010000001.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 1.1	Pyruvate2acetate-formate	SCFA	120,944	144,188	Pyruvate to acetate-formate E. coli	PFL_acetate	100%

CAJHQN010000012 (original name was: CAJHQN010000012.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 12.1	TPP_AA_metabolism	Putative	36,273	68,410

CAJHQN010000034 (original name was: CAJHQN010000034.1)

Region	Type	Class	From	To	Most similar known cluster		Similarity
Region 34.1	TPP_fatty_acids	Putative	71,304	97,005

No primary metabolite regions were found in these records:: CAJHQN010000002 (original name was: CAJHQN010000002.1); CAJHQN010000003 (original name was: CAJHQN010000003.1); CAJHQN010000004 (original name was: CAJHQN010000004.1); CAJHQN010000005 (original name was: CAJHQN010000005.1); CAJHQN010000006 (original name was: CAJHQN010000006.1); CAJHQN010000007 (original name was: CAJHQN010000007.1); CAJHQN010000008 (original name was: CAJHQN010000008.1); CAJHQN010000009 (original name was: CAJHQN010000009.1); CAJHQN010000010 (original name was: CAJHQN010000010.1); CAJHQN010000011 (original name was: CAJHQN010000011.1); CAJHQN010000013 (original name was: CAJHQN010000013.1); CAJHQN010000014 (original name was: CAJHQN010000014.1); CAJHQN010000015 (original name was: CAJHQN010000015.1); CAJHQN010000016 (original name was: CAJHQN010000016.1); CAJHQN010000017 (original name was: CAJHQN010000017.1); CAJHQN010000018 (original name was: CAJHQN010000018.1); CAJHQN010000019 (original name was: CAJHQN010000019.1); CAJHQN010000020 (original name was: CAJHQN010000020.1); CAJHQN010000021 (original name was: CAJHQN010000021.1); CAJHQN010000022 (original name was: CAJHQN010000022.1); CAJHQN010000023 (original name was: CAJHQN010000023.1); CAJHQN010000024 (original name was: CAJHQN010000024.1); CAJHQN010000025 (original name was: CAJHQN010000025.1); CAJHQN010000026 (original name was: CAJHQN010000026.1); CAJHQN010000027 (original name was: CAJHQN010000027.1); CAJHQN010000028 (original name was: CAJHQN010000028.1); CAJHQN010000029 (original name was: CAJHQN010000029.1); CAJHQN010000030 (original name was: CAJHQN010000030.1); CAJHQN010000031 (original name was: CAJHQN010000031.1); CAJHQN010000032 (original name was: CAJHQN010000032.1); CAJHQN010000033 (original name was: CAJHQN010000033.1); CAJHQN010000035 (original name was: CAJHQN010000035.1); CAJHQN010000036 (original name was: CAJHQN010000036.1); CAJHQN010000037 (original name was: CAJHQN010000037.1); CAJHQN010000038 (original name was: CAJHQN010000038.1); CAJHQN010000039 (original name was: CAJHQN010000039.1); CAJHQN010000040 (original name was: CAJHQN010000040.1); CAJHQN010000045 (original name was: CAJHQN010000045.1); CAJHQN010000056 (original name was: CAJHQN010000056.1); CAJHQN010000067 (original name was: CAJHQN010000067.1); CAJHQN010000078 (original name was: CAJHQN010000078.1); CAJHQN010000089 (original name was: CAJHQN010000089.1)

Compact view

c00001_CAJHQN0.. - Region 1 - Pyruvate2acetate-formate

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Location: 120,944 - 144,188 nt. (total: 23,245 nt) Show pHMM detection rules used

Pyruvate2acetate-formate: ((PFL_acetate1 or PFL_acetate2) and Radical_SAM)

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core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

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Gene details

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KnownClusterBlast

Similar known gene clusters

c00012_CAJHQN0.. - Region 1 - TPP_AA_metabolism

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Location: 36,273 - 68,410 nt. (total: 32,138 nt) Show pHMM detection rules used

TPP_AA_metabolism: (TPP_enzyme_C and not (PFL-like or PFL_6_pcresol or PFL_9_tma or Gly_radical or Gly_430_pcre or Gly_8-9_TMA or PFL_acetate1 or PFL_acetate2 or Gly_radical_scatole or PFL_proline or PFL_toluene) and minimum(2, [ALS_ss_C, AlaDh_PNT_C, Arginase, BKACE, BcrAD_BadFG, Beta_elim_lyase, CPSase_L_D2, Cys_Met_Meta_PP, ELFV_dehydrog, GRDB, Glu_syn_central, Glu_synthase, Gly_reductase, HAAA1, HG2B1, HG2B2, HGD-D, HleuD1, HleuD2, HleuS1, HleuS2, Homoserine_dh, ILVD_EDD, IlvC, Lactoyl-CoA1, Lactoyl-CoA2, Lyase_aromatic, MAAL_C, OKR_DC_1_5_lysine, OKR_DC_1_5_ornithine, OKR_DC_1_7_arginine, OKR_DC_1_C, OTCace, PALP, Proline_reductase, Sacchrp_dh_C, TPL, Thr_dehydrat_C, TnaA, Urocanase]) and not (POR or POR_N or PFOR_II))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

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Gene details

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KnownClusterBlast

Similar known gene clusters

No matches found.

c00034_CAJHQN0.. - Region 1 - TPP_fatty_acids

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Location: 71,304 - 97,005 nt. (total: 25,702 nt) Show pHMM detection rules used

TPP_fatty_acids: (TPP_enzyme_C and (minimum(2, [ACD1_car, ACP_syn_III_C, AcetylCoA_hyd_C, AcetylCoA_hydro, Acyl-CoA_dh_1, Acyl-CoA_dh_2, Butyrate_kinase, CT_Propionyl_CoA1, CT_Propionyl_CoA2, CT_Propionyl_CoA3, Carboxyl_trans, CoA_trans, CoA_trans_230_acto, CoA_trans_2_CAF, CoA_trans_6_Glutaconate, E1_dh, ECH_1, ECH_2, HBT, HBT_2, HCDH, HpaB, Ketoacyl-synt_C, Thiolase_C, Thiolase_N, adh_short, adh_short_C2]) or FA_synthesis) and not (PFL-like or PFL_6_pcresol or PFL_9_tma or Gly_radical or Gly_430_pcre or PFL_acetate1 or PFL_acetate2 or Gly_radical_scatole or PFL_proline or PFL_toluene) and not (POR or POR_N))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

resistance genes

encapsulation genes

electron transport genes

other genes

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Gene details

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KnownClusterBlast

Similar known gene clusters

No matches found.