Probiotic potential risk score
| ARGs (CARD) | VFs (VFDB) | PGs (PHI-base) | PPRS |
|---|---|---|---|
| 2 | 0 | 1 | 2.24 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| ARO accession | ARO name | Identity | Coverage | CARD name | Accession no. |
|---|---|---|---|---|---|
| ARO:3000194 | tet(W) | 96.56 | 100.00 | tet(W) | AJ222769.3 |
| ARO:3004455 | Streptococcus suis chloramphenicol acetyltransferase | 96.30 | 100.00 | Ssui_ACT_CHL | AB080798.1 |
RGI v6.0.0 (Database: CARD Variants v4.0.0, Jul. 2022 release)
ResFinder
| Resistance gene | Identity | Coverage | Phenotype | Accession no. |
|---|---|---|---|---|
| cat(pC194) | 98.92 | 100.00 | Phenicol resistance | NC_002013 |
| tet(W) | 98.91 | 100.00 | Tetracycline resistance | FN396364 |
ResFinder v4.0 (Database: resfinder_db, May 2022 release)
AMRFinderPlus
| Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|
| tet(W) | tetracycline resistance ribosomal protection protein Tet(W) | BLASTX | 99.37 | 100.00 | WP_000691721.1 |
| cat-TC | type A-9 chloramphenicol O-acetyltransferase Cat-TC | INTERNAL_STOP | 90.79 | 100.00 | WP_032488880.1 |
AMRFinderPlus v3.10.42 (Database: Oct. 2022 release)
Virulence factors
Virulence Factor Database (VFDB)
| Gene ID | Gene name | Identity | Coverage | e-value | VF name | VF category | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
BLASTN v2.8.1+ (Database: VFDB, Jun. 2022 release)
VirulenceFinder
| Database | Virulence factor | Identity | Coverage | Protein function | Accession no. |
|---|---|---|---|---|---|
| No hit found | |||||
VirulenceFinder v2.0.3 (Database: virulencefinder_db, Dec. 2022 release)
Pathogenic genes
PHI-base
| Protein ID | Gene name | Identity | Coverage | e-value | Function | Gene ID |
|---|---|---|---|---|---|---|
| P0A355 | CspA | 84.61 | 97.01 | 3.80e-36 | Cold shock protein | CAA62903 |
BLASTP v2.8.1+ (Database: PHI-base v4.14, Nov. 2022 release)
Plasmid
PlasmidFinder
| Plasmid | Identity | Query / Template | Accession no. |
|---|---|---|---|
| rep30 | 100.00 | 777 / 777 | CP006013 |
| repUS67 | 100.00 | 1039 / 1039 | CP006012 |
PlasmidFinder 2.0.1 (Database: plasmidfinder_db, Jan. 2023 release)
Prophage
Phigaro
| Scaffold | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| CP006011.1 | 1538949 | 1554550 | False | Siphoviridae | VOG4999, VOG0205, VOG4841, VOG4581, VOG4544, VOG4556, VOG4568, VOG0204, VOG0198, VOG5088, VOG4615, VOG0243, VOG5826 |
| CP006014.1 | 3288 | 39183 | False | Siphoviridae | VOG0327, VOG4609, VOG4632, VOG6545, VOG0322, VOG4548, VOG0650, VOG0321, VOG3478, VOG8520, VOG8520, VOG4602, VOG0275, VOG0703, VOG1637, VOG4626, VOG9997, VOG0565, VOG10972, VOG3462, VOG0801, VOG0083, VOG0209, VOG4586, VOG0207, VOG0205, VOG0204, VOG4553, VOG4573, VOG4556, VOG1886 |
Phigaro v2.3.0 (Database: Aug. 2017 release)