Probiotic potential risk score
| ARGs (CARD) | VFs (VFDB) | PGs (PHI-base) | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| ARO accession | ARO name | Identity | Coverage | CARD name | Accession no. |
|---|---|---|---|---|---|
| No hit found | |||||
RGI v6.0.0 (Database: CARD Variants v4.0.0, Jul. 2022 release)
ResFinder
| Resistance gene | Identity | Coverage | Phenotype | Accession no. |
|---|---|---|---|---|
| ClpL | 98.39 | 100.00 | Disinfectant resistance | CP023753 |
ResFinder v4.0 (Database: resfinder_db, May 2022 release)
AMRFinderPlus
| Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|
| No hit found | |||||
AMRFinderPlus v3.10.42 (Database: Oct. 2022 release)
Virulence factors
Virulence Factor Database (VFDB)
| Gene ID | Gene name | Identity | Coverage | e-value | VF name | VF category | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
BLASTN v2.8.1+ (Database: VFDB, Jun. 2022 release)
VirulenceFinder
| Database | Virulence factor | Identity | Coverage | Protein function | Accession no. |
|---|---|---|---|---|---|
| No hit found | |||||
VirulenceFinder v2.0.3 (Database: virulencefinder_db, Dec. 2022 release)
Pathogenic genes
PHI-base
| Protein ID | Gene name | Identity | Coverage | e-value | Function | Gene ID |
|---|---|---|---|---|---|---|
| S4E4Q5 | WalR | 84.25 | 99.57 | 2.36e-146 | Transcriptional regulatory protein | EPH95667 |
| Q82ZX2 | CspR | 84.61 | 97.01 | 3.75e-37 | Cold shock protein | AAO82613 |
BLASTP v2.8.1+ (Database: PHI-base v4.14, Nov. 2022 release)
Plasmid
PlasmidFinder
| Plasmid | Identity | Query / Template | Accession no. |
|---|---|---|---|
| rep28 | 100.00 | 936 / 936 | CP005948 |
| rep38 | 87.78 | 630 / 903 | CP005943 |
PlasmidFinder 2.0.1 (Database: plasmidfinder_db, Jan. 2023 release)
Prophage
Phigaro
| Scaffold | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| CP076824.1 | 40353 | 51019 | False | Siphoviridae | VOG4632, VOG0205, VOG4841, VOG4581, VOG4544, VOG2935, VOG4556, VOG4568, VOG0204, VOG0198 |
| CP076824.1 | 559514 | 590441 | False | Siphoviridae | VOG0685, VOG0322, VOG0514, VOG8647, VOG0189, VOG6005, VOG1298, VOG0586, VOG0044, VOG3643, VOG4673, VOG5278, VOG5088, VOG4844, VOG4556, VOG4556, VOG4573, VOG4553, VOG0562, VOG4589, VOG0539, VOG0704, VOG4586, VOG0541, VOG6163, VOG0801, VOG4619, VOG3498, VOG9997, VOG8917, VOG9888 |
| CP076824.1 | 1086864 | 1126000 | False | Siphoviridae | VOG1561, VOG4602, VOG6495, VOG2338, VOG4552, VOG6450, VOG0650, VOG0685, VOG0322, VOG0514, VOG8647, VOG0189, VOG4693, VOG0044, VOG0198, VOG10129, VOG4571, VOG5088, VOG4571, VOG4571, VOG4841, VOG4581, VOG1886, VOG0202, VOG4556, VOG4573, VOG4553, VOG0204, VOG0205, VOG0207, VOG4586, VOG0209, VOG0660, VOG6163, VOG4605, VOG4599, VOG10957 |
| CP076824.1 | 1890680 | 1915011 | False | Siphoviridae | VOG9998, VOG10957, VOG4599, VOG4605, VOG6163, VOG0660, VOG0209, VOG4586, VOG0207, VOG0205, VOG0204, VOG4553, VOG4573, VOG4556, VOG0202, VOG1886, VOG4581, VOG4841 |
| CP076824.1 | 2219294 | 2225095 | False | Siphoviridae | VOG4544, VOG4581, VOG4841, VOG0205 |
Phigaro v2.3.0 (Database: Aug. 2017 release)