Probiotic potential risk score
| ARGs (CARD) | VFs (VFDB) | PGs (PHI-base) | PPRS |
|---|---|---|---|
| 0 | 0 | 1 | 1.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| ARO accession | ARO name | Identity | Coverage | CARD name | Accession no. |
|---|---|---|---|---|---|
| No hit found | |||||
RGI v6.0.0 (Database: CARD Variants v4.0.0, Jul. 2022 release)
ResFinder
| Resistance gene | Identity | Coverage | Phenotype | Accession no. |
|---|---|---|---|---|
| No hit found | ||||
ResFinder v4.0 (Database: resfinder_db, May 2022 release)
AMRFinderPlus
| Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|
| No hit found | |||||
AMRFinderPlus v3.10.42 (Database: Oct. 2022 release)
Virulence factors
Virulence Factor Database (VFDB)
| Gene ID | Gene name | Identity | Coverage | e-value | VF name | VF category | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
BLASTN v2.8.1+ (Database: VFDB, Jun. 2022 release)
VirulenceFinder
| Database | Virulence factor | Identity | Coverage | Protein function | Accession no. |
|---|---|---|---|---|---|
| No hit found | |||||
VirulenceFinder v2.0.3 (Database: virulencefinder_db, Dec. 2022 release)
Pathogenic genes
PHI-base
| Protein ID | Gene name | Identity | Coverage | e-value | Function | Gene ID |
|---|---|---|---|---|---|---|
| P0A355 | CspA | 80.30 | 98.51 | 6.69e-36 | Cold shock protein | CAA62903 |
BLASTP v2.8.1+ (Database: PHI-base v4.14, Nov. 2022 release)
Plasmid
PlasmidFinder
| Plasmid | Identity | Query / Template | Accession no. |
|---|---|---|---|
| rep38 | 100.00 | 903 / 903 | CP005943 |
| repUS67 | 100.00 | 1039 / 1039 | CP006012 |
| repUS72 | 100.00 | 1038 / 1038 | CP003855 |
| repUS75 | 100.00 | 1059 / 1059 | CP002393 |
PlasmidFinder 2.0.1 (Database: plasmidfinder_db, Jan. 2023 release)
Prophage
Phigaro
| Scaffold | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| AVAB01000110.1 | 10228 | 15940 | False | Unknown | VOG9304, VOG1013 |
| AVAB01000001.1 | 289465 | 296863 | True | Siphoviridae | VOG4632, VOG2687, VOG8241, VOG0275, VOG0275, VOG0944, VOG8387 |
| AVAB01000001.1 | 542349 | 578802 | False | Siphoviridae | VOG9667, VOG2228, VOG0321, VOG0322, VOG4548, VOG6545, VOG4606, VOG0327, VOG8685, VOG0198, VOG4841, VOG4581, VOG1886, VOG10142, VOG4556, VOG4568, VOG0204, VOG0205, VOG4317, VOG0207, VOG0209, VOG6163, VOG0801, VOG3462, VOG10972, VOG0565, VOG9997, VOG10899, VOG4687, VOG1637, VOG0703, VOG4615 |
| AVAB01000001.1 | 764230 | 765410 | False | Unknown | VOG6495, VOG4552 |
| AVAB01000001.1 | 1200337 | 1208845 | True | Myoviridae / Podoviridae | VOG0275, VOG0275, VOG0275, VOG4737, VOG5088, VOG5088, VOG4548, VOG4635 |
Phigaro v2.3.0 (Database: Aug. 2017 release)