Probiotic potential risk score
| ARGs (CARD) | VFs (VFDB) | PGs (PHI-base) | PPRS |
|---|---|---|---|
| 0 | 0 | 1 | 1.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| ARO accession | ARO name | Identity | Coverage | CARD name | Accession no. |
|---|---|---|---|---|---|
| No hit found | |||||
RGI v6.0.0 (Database: CARD Variants v4.0.0, Jul. 2022 release)
ResFinder
| Resistance gene | Identity | Coverage | Phenotype | Accession no. |
|---|---|---|---|---|
| ClpL | 98.20 | 100.00 | Disinfectant resistance | CP023753 |
ResFinder v4.0 (Database: resfinder_db, May 2022 release)
AMRFinderPlus
| Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|
| No hit found | |||||
AMRFinderPlus v3.10.42 (Database: Oct. 2022 release)
Virulence factors
Virulence Factor Database (VFDB)
| Gene ID | Gene name | Identity | Coverage | e-value | VF name | VF category | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
BLASTN v2.8.1+ (Database: VFDB, Jun. 2022 release)
VirulenceFinder
| Database | Virulence factor | Identity | Coverage | Protein function | Accession no. |
|---|---|---|---|---|---|
| No hit found | |||||
VirulenceFinder v2.0.3 (Database: virulencefinder_db, Dec. 2022 release)
Pathogenic genes
PHI-base
| Protein ID | Gene name | Identity | Coverage | e-value | Function | Gene ID |
|---|---|---|---|---|---|---|
| S4E4Q5 | WalR | 80.34 | 99.15 | 7.56e-138 | Transcriptional regulatory protein | EPH95667 |
BLASTP v2.8.1+ (Database: PHI-base v4.14, Nov. 2022 release)
Plasmid
PlasmidFinder
| Plasmid | Identity | Query / Template | Accession no. |
|---|---|---|---|
| rep28 | 97.86 | 936 / 936 | CP005948 |
| rep38 | 88.95 | 561 / 903 | CP005943 |
| repUS73 | 86.09 | 726 / 1101 | CP002654 |
| repUS64 | 85.48 | 930 / 954 | JN601038 |
PlasmidFinder 2.0.1 (Database: plasmidfinder_db, Jan. 2023 release)
Prophage
Phigaro
| Scaffold | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| CP005977.1 | 451872 | 463634 | True | Unknown | VOG1292, VOG4549, VOG10391, VOG0275, VOG8483, VOG5088, VOG0862, VOG6495, VOG4552, VOG5088, VOG6344, VOG3298 |
| CP005977.1 | 2460757 | 2465947 | False | Unknown | VOG0198, VOG8438, VOG7991, VOG0703 |
| CP005981.1 | 27338 | 60390 | False | Siphoviridae | VOG4705, VOG9955, VOG10972, VOG4599, VOG4605, VOG8263, VOG0660, VOG0209, VOG4586, VOG0207, VOG0205, VOG0204, VOG4553, VOG4573, VOG4556, VOG0202, VOG1886, VOG1886, VOG4581, VOG4841, VOG0198, VOG5821, VOG0044, VOG0195, VOG0052, VOG0189, VOG4799, VOG0514, VOG0226, VOG6394, VOG0283, VOG0321 |
Phigaro v2.3.0 (Database: Aug. 2017 release)