Probiotic potential risk score
| ARGs (CARD) | VFs (VFDB) | PGs (PHI-base) | PPRS |
|---|---|---|---|
| 0 | 0 | 0 | 0.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| ARO accession | ARO name | Identity | Coverage | CARD name | Accession no. |
|---|---|---|---|---|---|
| No hit found | |||||
RGI v6.0.0 (Database: CARD Variants v4.0.0, Jul. 2022 release)
ResFinder
| Resistance gene | Identity | Coverage | Phenotype | Accession no. |
|---|---|---|---|---|
| No hit found | ||||
ResFinder v4.0 (Database: resfinder_db, May 2022 release)
AMRFinderPlus
| Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|
| No hit found | |||||
AMRFinderPlus v3.10.42 (Database: Oct. 2022 release)
Virulence factors
Virulence Factor Database (VFDB)
| Gene ID | Gene name | Identity | Coverage | e-value | VF name | VF category | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
BLASTN v2.8.1+ (Database: VFDB, Jun. 2022 release)
VirulenceFinder
| Database | Virulence factor | Identity | Coverage | Protein function | Accession no. |
|---|---|---|---|---|---|
| No hit found | |||||
VirulenceFinder v2.0.3 (Database: virulencefinder_db, Dec. 2022 release)
Pathogenic genes
PHI-base
| Protein ID | Gene name | Identity | Coverage | e-value | Function | Gene ID |
|---|---|---|---|---|---|---|
| No hit found | ||||||
BLASTP v2.8.1+ (Database: PHI-base v4.14, Nov. 2022 release)
Plasmid
PlasmidFinder
| Plasmid | Identity | Query / Template | Accession no. |
|---|---|---|---|
| No hit found | |||
PlasmidFinder 2.0.1 (Database: plasmidfinder_db, Jan. 2023 release)
Prophage
Phigaro
| Scaffold | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| CP011386.1 | 735581 | 743588 | False | Siphoviridae | VOG4588, VOG0198, VOG4606, VOG4853, VOG0831, VOG10533, VOG8757, VOG2687 |
| CP011386.1 | 896361 | 904440 | False | Myoviridae | VOG9667, VOG5353, VOG4552, VOG8241, VOG3854, VOG9667, VOG9042, VOG0685, VOG0283, VOG5046, VOG4566, VOG0226, VOG9667, VOG9098, VOG0198 |
| CP011386.1 | 905469 | 933430 | False | Myoviridae | VOG4618, VOG7442, VOG8462, VOG7407, VOG1912, VOG5027, VOG4918, VOG1915, VOG1942, VOG4710, VOG1353, VOG1881, VOG1883, VOG1352, VOG4699, VOG3888, VOG6163, VOG1956, VOG1433, VOG1348, VOG0573, VOG4550, VOG4691, VOG4845, VOG10043, VOG9945 |
| CP011386.1 | 1258630 | 1285892 | False | Myoviridae | VOG7017, VOG0861, VOG4705, VOG9945, VOG5763, VOG4845, VOG4691, VOG4550, VOG0573, VOG1348, VOG1433, VOG4918, VOG5904, VOG4699, VOG1352, VOG1883, VOG1353, VOG4710, VOG1942, VOG6132, VOG1915, VOG4824, VOG4564, VOG1912, VOG7407, VOG3699 |
| CP011386.1 | 1404061 | 1441183 | False | Siphoviridae | VOG8608, VOG1594, VOG8355, VOG4659, VOG4633, VOG4545, VOG0660, VOG0209, VOG4586, VOG0207, VOG0205, VOG0204, VOG4553, VOG4573, VOG4556, VOG0202, VOG1886, VOG4581, VOG4841, VOG1345, VOG0198, VOG10904, VOG0327, VOG10904, VOG4677, VOG6970, VOG4966, VOG4609, VOG4632, VOG6545, VOG0322, VOG10904, VOG5562, VOG5998, VOG0195, VOG0275, VOG4548, VOG10413, VOG9708 |
Phigaro v2.3.0 (Database: Aug. 2017 release)