Probiotic potential risk score
| ARGs (CARD) | VFs (VFDB) | PGs (PHI-base) | PPRS |
|---|---|---|---|
| 2 | 0 | 0 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| ARO accession | ARO name | Identity | Coverage | CARD name | Accession no. |
|---|---|---|---|---|---|
| ARO:3003730 | Bifidobacterium bifidum ileS conferring resistance to mupirocin | 99.37 | 100.09 | Bbif_ileS_MUP | CP001840.1 |
| ARO:3004480 | Bifidobacterium adolescentis rpoB mutants conferring resistance to rifampicin | 91.57 | 104.05 | Bado_rpoB_RIF | NC_008618.1 |
RGI v6.0.0 (Database: CARD Variants v4.0.0, Jul. 2022 release)
ResFinder
| Resistance gene | Identity | Coverage | Phenotype | Accession no. |
|---|---|---|---|---|
| No hit found | ||||
ResFinder v4.0 (Database: resfinder_db, May 2022 release)
AMRFinderPlus
| Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|
| No hit found | |||||
AMRFinderPlus v3.10.42 (Database: Oct. 2022 release)
Virulence factors
Virulence Factor Database (VFDB)
| Gene ID | Gene name | Identity | Coverage | e-value | VF name | VF category | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
BLASTN v2.8.1+ (Database: VFDB, Jun. 2022 release)
VirulenceFinder
| Database | Virulence factor | Identity | Coverage | Protein function | Accession no. |
|---|---|---|---|---|---|
| No hit found | |||||
VirulenceFinder v2.0.3 (Database: virulencefinder_db, Dec. 2022 release)
Pathogenic genes
PHI-base
| Protein ID | Gene name | Identity | Coverage | e-value | Function | Gene ID |
|---|---|---|---|---|---|---|
| No hit found | ||||||
BLASTP v2.8.1+ (Database: PHI-base v4.14, Nov. 2022 release)
Plasmid
PlasmidFinder
| Plasmid | Identity | Query / Template | Accession no. |
|---|---|---|---|
| No hit found | |||
PlasmidFinder 2.0.1 (Database: plasmidfinder_db, Jan. 2023 release)
Prophage
Phigaro
| Scaffold | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| JSDY01000001.1 | 46952 | 72150 | False | Myoviridae | VOG0677, VOG0085, VOG2484, VOG0384, VOG4548, VOG5689, VOG0382, VOG0052, VOG8190, VOG2090 |
| JSDY01000004.1 | 77731 | 82548 | False | Siphoviridae | VOG6371, VOG0731 |
| JSDY01000004.1 | 134427 | 156770 | False | Siphoviridae | VOG4597, VOG0992, VOG0136, VOG0991, VOG0275, VOG3654, VOG4545, VOG4582, VOG3651, VOG4557, VOG4621, VOG1159, VOG3409, VOG1581, VOG0880, VOG4553, VOG4555, VOG4576, VOG0720, VOG4544, VOG1574, VOG0183, VOG1422, VOG9852 |
| JSDY01000004.1 | 162934 | 168093 | False | Siphoviridae | VOG2703, VOG1229, VOG4944, VOG4602, VOG4821 |
Phigaro v2.3.0 (Database: Aug. 2017 release)