Probiotic potential risk score
| ARGs (CARD) | VFs (VFDB) | PGs (PHI-base) | PPRS |
|---|---|---|---|
| 2 | 0 | 0 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| ARO accession | ARO name | Identity | Coverage | CARD name | Accession no. |
|---|---|---|---|---|---|
| ARO:3003730 | Bifidobacterium bifidum ileS conferring resistance to mupirocin | 99.91 | 100.09 | Bbif_ileS_MUP | CP001840.1 |
| ARO:3004480 | Bifidobacterium adolescentis rpoB mutants conferring resistance to rifampicin | 91.30 | 100.08 | Bado_rpoB_RIF | NC_008618.1 |
RGI v6.0.0 (Database: CARD Variants v4.0.0, Jul. 2022 release)
ResFinder
| Resistance gene | Identity | Coverage | Phenotype | Accession no. |
|---|---|---|---|---|
| No hit found | ||||
ResFinder v4.0 (Database: resfinder_db, May 2022 release)
AMRFinderPlus
| Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|
| No hit found | |||||
AMRFinderPlus v3.10.42 (Database: Oct. 2022 release)
Virulence factors
Virulence Factor Database (VFDB)
| Gene ID | Gene name | Identity | Coverage | e-value | VF name | VF category | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
BLASTN v2.8.1+ (Database: VFDB, Jun. 2022 release)
VirulenceFinder
| Database | Virulence factor | Identity | Coverage | Protein function | Accession no. |
|---|---|---|---|---|---|
| No hit found | |||||
VirulenceFinder v2.0.3 (Database: virulencefinder_db, Dec. 2022 release)
Pathogenic genes
PHI-base
| Protein ID | Gene name | Identity | Coverage | e-value | Function | Gene ID |
|---|---|---|---|---|---|---|
| No hit found | ||||||
BLASTP v2.8.1+ (Database: PHI-base v4.14, Nov. 2022 release)
Plasmid
PlasmidFinder
| Plasmid | Identity | Query / Template | Accession no. |
|---|---|---|---|
| No hit found | |||
PlasmidFinder 2.0.1 (Database: plasmidfinder_db, Jan. 2023 release)
Prophage
Phigaro
| Scaffold | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| JSDT01000002.1 | 125745 | 145633 | True | Siphoviridae | VOG0189, VOG1246, VOG0944, VOG0944, VOG3447, VOG1031, VOG5532, VOG1246, VOG7140, VOG0189, VOG0189, VOG0944, VOG0274 |
| JSDT01000002.1 | 1119107 | 1126692 | False | Siphoviridae | VOG9874, VOG1724, VOG3594, VOG5539, VOG2842 |
| JSDT01000002.1 | 1139972 | 1166511 | False | Siphoviridae | VOG9343, VOG5782, VOG0943, VOG2538, VOG2038, VOG2545, VOG0376, VOG4841, VOG9852, VOG2560, VOG5101, VOG0720, VOG4576, VOG4553, VOG0880, VOG1581, VOG5601, VOG5793, VOG4605, VOG4599, VOG6914 |
| JSDT01000002.1 | 1438198 | 1445885 | False | Siphoviridae | VOG5395, VOG4602, VOG0010, VOG3304, VOG0585, VOG11075 |
| JSDT01000002.1 | 1517216 | 1537716 | False | Myoviridae | VOG0384, VOG4548, VOG5689, VOG0382, VOG0052, VOG8190, VOG2090 |
Phigaro v2.3.0 (Database: Aug. 2017 release)