Probiotic potential risk score
| ARGs (CARD) | VFs (VFDB) | PGs (PHI-base) | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| ARO accession | ARO name | Identity | Coverage | CARD name | Accession no. |
|---|---|---|---|---|---|
| No hit found | |||||
RGI v6.0.0 (Database: CARD Variants v4.0.0, Jul. 2022 release)
ResFinder
| Resistance gene | Identity | Coverage | Phenotype | Accession no. |
|---|---|---|---|---|
| No hit found | ||||
ResFinder v4.0 (Database: resfinder_db, May 2022 release)
AMRFinderPlus
| Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|
| No hit found | |||||
AMRFinderPlus v3.10.42 (Database: Oct. 2022 release)
Virulence factors
Virulence Factor Database (VFDB)
| Gene ID | Gene name | Identity | Coverage | e-value | VF name | VF category | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
BLASTN v2.8.1+ (Database: VFDB, Jun. 2022 release)
VirulenceFinder
| Database | Virulence factor | Identity | Coverage | Protein function | Accession no. |
|---|---|---|---|---|---|
| No hit found | |||||
VirulenceFinder v2.0.3 (Database: virulencefinder_db, Dec. 2022 release)
Pathogenic genes
PHI-base
| Protein ID | Gene name | Identity | Coverage | e-value | Function | Gene ID |
|---|---|---|---|---|---|---|
| S4E4Q5 | WalR | 84.68 | 99.57 | 1.79e-144 | Transcriptional regulatory protein | EPH95667 |
| Q82ZX2 | CspR | 87.88 | 98.51 | 1.61e-40 | Cold shock protein | AAO82613 |
BLASTP v2.8.1+ (Database: PHI-base v4.14, Nov. 2022 release)
Plasmid
PlasmidFinder
| Plasmid | Identity | Query / Template | Accession no. |
|---|---|---|---|
| No hit found | |||
PlasmidFinder 2.0.1 (Database: plasmidfinder_db, Jan. 2023 release)
Prophage
Phigaro
| Scaffold | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| CBZU010000001.1 | 2639291 | 2671864 | False | Siphoviridae | VOG4918, VOG0703, VOG7017, VOG0861, VOG4856, VOG4619, VOG0801, VOG4545, VOG1323, VOG0725, VOG0799, VOG1321, VOG5660, VOG1320, VOG4713, VOG1322, VOG0694, VOG4555, VOG4564, VOG0720, VOG10227, VOG0796, VOG4549, VOG10904, VOG4570, VOG3691, VOG0198, VOG0044, VOG0102, VOG9759, VOG6238, VOG4693, VOG6623, VOG7018, VOG4584, VOG0189, VOG4566, VOG0186, VOG1309, VOG5532 |
| CBZU010000001.1 | 2765787 | 2776657 | False | Siphoviridae | VOG4589, VOG0204, VOG4568, VOG4556, VOG5051, VOG4544, VOG4581, VOG4609, VOG4632, VOG4632 |
| CBZU010000001.1 | 2951883 | 2992090 | False | Siphoviridae | VOG4918, VOG0054, VOG7888, VOG4705, VOG4599, VOG4605, VOG2225, VOG4586, VOG0704, VOG0539, VOG4589, VOG0204, VOG5601, VOG4553, VOG4568, VOG4556, VOG3644, VOG4544, VOG4581, VOG4841, VOG4549, VOG0198, VOG0044, VOG3643, VOG0152, VOG0195, VOG4567, VOG4693, VOG6623, VOG7018, VOG7735, VOG0025, VOG4799, VOG0226, VOG0514, VOG0283, VOG0321, VOG3642, VOG0181, VOG0807, VOG4552, VOG5353, VOG8520, VOG0862, VOG7656, VOG3304 |
Phigaro v2.3.0 (Database: Aug. 2017 release)