Probiotic potential risk score
| ARGs (CARD) | VFs (VFDB) | PGs (PHI-base) | PPRS |
|---|---|---|---|
| 2 | 0 | 0 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| ARO accession | ARO name | Identity | Coverage | CARD name | Accession no. |
|---|---|---|---|---|---|
| ARO:3002867 | dfrF | 100.00 | 100.00 | dfrF | AF028812.1 |
| ARO:3004480 | Bifidobacterium adolescentis rpoB mutants conferring resistance to rifampicin | 98.48 | 100.00 | Bado_rpoB_RIF | NC_008618.1 |
RGI v6.0.0 (Database: CARD Variants v4.0.0, Jul. 2022 release)
ResFinder
| Resistance gene | Identity | Coverage | Phenotype | Accession no. |
|---|---|---|---|---|
| No hit found | ||||
ResFinder v4.0 (Database: resfinder_db, May 2022 release)
AMRFinderPlus
| Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|
| dfrF | trimethoprim-resistant dihydrofolate reductase DfrF | EXACTX | 100.00 | 100.00 | WP_002322211.1 |
AMRFinderPlus v3.10.42 (Database: Oct. 2022 release)
Virulence factors
Virulence Factor Database (VFDB)
| Gene ID | Gene name | Identity | Coverage | e-value | VF name | VF category | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
BLASTN v2.8.1+ (Database: VFDB, Jun. 2022 release)
VirulenceFinder
| Database | Virulence factor | Identity | Coverage | Protein function | Accession no. |
|---|---|---|---|---|---|
| No hit found | |||||
VirulenceFinder v2.0.3 (Database: virulencefinder_db, Dec. 2022 release)
Pathogenic genes
PHI-base
| Protein ID | Gene name | Identity | Coverage | e-value | Function | Gene ID |
|---|---|---|---|---|---|---|
| No hit found | ||||||
BLASTP v2.8.1+ (Database: PHI-base v4.14, Nov. 2022 release)
Plasmid
PlasmidFinder
| Plasmid | Identity | Query / Template | Accession no. |
|---|---|---|---|
| No hit found | |||
PlasmidFinder 2.0.1 (Database: plasmidfinder_db, Jan. 2023 release)
Prophage
Phigaro
| Scaffold | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| CYZC01000001.1 | 992195 | 1012149 | False | Siphoviridae | VOG0686, VOG2038, VOG3028, VOG4544, VOG0720, VOG4555, VOG4553, VOG1581, VOG4589, VOG1154, VOG4557, VOG4545, VOG3653, VOG5361, VOG5361, VOG5361 |
| CYZC01000001.1 | 1082676 | 1093250 | False | Siphoviridae | VOG2038, VOG2023, VOG1574, VOG5101, VOG0720, VOG2894, VOG4555, VOG4572, VOG1210, VOG5387 |
| CYZC01000003.1 | 124733 | 137392 | False | Siphoviridae | VOG4841, VOG4544, VOG4556, VOG4568, VOG5587, VOG5589, VOG5588, VOG5793, VOG9569 |
| CYZC01000004.1 | 55555 | 74686 | False | Siphoviridae | VOG1159, VOG1158, VOG1210, VOG6197, VOG4553, VOG4568, VOG4556, VOG4544, VOG0296, VOG2038, VOG2902, VOG9438, VOG5067, VOG5733, VOG4693, VOG0226, VOG1309, VOG4600, VOG2124, VOG7246, VOG4552 |
Phigaro v2.3.0 (Database: Aug. 2017 release)