Probiotic potential risk score
| ARGs (CARD) | VFs (VFDB) | PGs (PHI-base) | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| ARO accession | ARO name | Identity | Coverage | CARD name | Accession no. |
|---|---|---|---|---|---|
| No hit found | |||||
RGI v6.0.0 (Database: CARD Variants v4.0.0, Jul. 2022 release)
ResFinder
| Resistance gene | Identity | Coverage | Phenotype | Accession no. |
|---|---|---|---|---|
| ClpL | 98.11 | 100.00 | Disinfectant resistance | CP023753 |
ResFinder v4.0 (Database: resfinder_db, May 2022 release)
AMRFinderPlus
| Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|
| No hit found | |||||
AMRFinderPlus v3.10.42 (Database: Oct. 2022 release)
Virulence factors
Virulence Factor Database (VFDB)
| Gene ID | Gene name | Identity | Coverage | e-value | VF name | VF category | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
BLASTN v2.8.1+ (Database: VFDB, Jun. 2022 release)
VirulenceFinder
| Database | Virulence factor | Identity | Coverage | Protein function | Accession no. |
|---|---|---|---|---|---|
| No hit found | |||||
VirulenceFinder v2.0.3 (Database: virulencefinder_db, Dec. 2022 release)
Pathogenic genes
PHI-base
| Protein ID | Gene name | Identity | Coverage | e-value | Function | Gene ID |
|---|---|---|---|---|---|---|
| S4E4Q5 | WalR | 84.25 | 99.57 | 2.41e-146 | Transcriptional regulatory protein | EPH95667 |
| Q82ZX2 | CspR | 84.61 | 97.01 | 3.82e-37 | Cold shock protein | AAO82613 |
BLASTP v2.8.1+ (Database: PHI-base v4.14, Nov. 2022 release)
Plasmid
PlasmidFinder
| Plasmid | Identity | Query / Template | Accession no. |
|---|---|---|---|
| repUS73 | 93.91 | 1101 / 1101 | CP002654 |
PlasmidFinder 2.0.1 (Database: plasmidfinder_db, Jan. 2023 release)
Prophage
Phigaro
| Scaffold | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| LUXO01000012.1 | 55723 | 82989 | False | Siphoviridae | VOG0322, VOG0514, VOG4799, VOG0189, VOG6005, VOG10015, VOG1551, VOG5883, VOG0044, VOG0044, VOG3643, VOG0198, VOG1315, VOG4841, VOG10904, VOG4581, VOG1886, VOG0202, VOG4556, VOG4573, VOG4553, VOG0204, VOG0205, VOG0207, VOG4586, VOG0660, VOG4605 |
| LUXO01000024.1 | 3940 | 25642 | False | Siphoviridae | VOG7038, VOG4564, VOG10914, VOG3434, VOG1887, VOG4713, VOG1330, VOG0704, VOG4634, VOG1333, VOG1334, VOG4545, VOG1335, VOG10608, VOG3498 |
| LUXO01000033.1 | 385568 | 417343 | False | Siphoviridae | VOG0054, VOG1637, VOG8294, VOG4783, VOG7896, VOG4334, VOG4626, VOG1637, VOG3463, VOG4619, VOG0801, VOG4910, VOG4545, VOG0701, VOG9763, VOG0698, VOG0697, VOG0696, VOG0695, VOG4572, VOG4555, VOG0692, VOG0691, VOG4544, VOG3699, VOG0198, VOG4693, VOG4566, VOG0186, VOG0186, VOG1309, VOG7298, VOG0181, VOG6495, VOG11003 |
| LUXO01000033.1 | 446375 | 477303 | False | Siphoviridae | VOG8868, VOG7896, VOG4334, VOG4626, VOG4904, VOG7548, VOG3462, VOG0801, VOG6163, VOG0725, VOG0799, VOG0724, VOG5660, VOG4713, VOG1329, VOG4555, VOG4564, VOG0720, VOG10227, VOG0796, VOG1183, VOG1315, VOG0198, VOG9671, VOG0044, VOG6970, VOG1297, VOG3468, VOG3480, VOG0327, VOG0189, VOG5046, VOG0535, VOG2703 |
| LUXO01000033.1 | 864374 | 870722 | False | Siphoviridae | VOG0205, VOG4841, VOG4581, VOG4544, VOG1886, VOG4556 |
Phigaro v2.3.0 (Database: Aug. 2017 release)