Probiotic potential risk score
| ARGs (CARD) | VFs (VFDB) | PGs (PHI-base) | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| ARO accession | ARO name | Identity | Coverage | CARD name | Accession no. |
|---|---|---|---|---|---|
| No hit found | |||||
RGI v6.0.0 (Database: CARD Variants v4.0.0, Jul. 2022 release)
ResFinder
| Resistance gene | Identity | Coverage | Phenotype | Accession no. |
|---|---|---|---|---|
| ClpL | 98.20 | 100.00 | Disinfectant resistance | CP023753 |
ResFinder v4.0 (Database: resfinder_db, May 2022 release)
AMRFinderPlus
| Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|
| No hit found | |||||
AMRFinderPlus v3.10.42 (Database: Oct. 2022 release)
Virulence factors
Virulence Factor Database (VFDB)
| Gene ID | Gene name | Identity | Coverage | e-value | VF name | VF category | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
BLASTN v2.8.1+ (Database: VFDB, Jun. 2022 release)
VirulenceFinder
| Database | Virulence factor | Identity | Coverage | Protein function | Accession no. |
|---|---|---|---|---|---|
| No hit found | |||||
VirulenceFinder v2.0.3 (Database: virulencefinder_db, Dec. 2022 release)
Pathogenic genes
PHI-base
| Protein ID | Gene name | Identity | Coverage | e-value | Function | Gene ID |
|---|---|---|---|---|---|---|
| S4E4Q5 | WalR | 84.68 | 99.57 | 1.81e-144 | Transcriptional regulatory protein | EPH95667 |
| Q82ZX2 | CspR | 87.88 | 98.51 | 1.63e-40 | Cold shock protein | AAO82613 |
BLASTP v2.8.1+ (Database: PHI-base v4.14, Nov. 2022 release)
Plasmid
PlasmidFinder
| Plasmid | Identity | Query / Template | Accession no. |
|---|---|---|---|
| rep38 | 80.88 | 1051 / 1104 | CP002655 |
PlasmidFinder 2.0.1 (Database: plasmidfinder_db, Jan. 2023 release)
Prophage
Phigaro
| Scaffold | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| JTIX01000014.1 | 3500 | 10976 | False | Unknown | VOG0152, VOG9759, VOG9741, VOG4693, VOG6623, VOG9860, VOG11003, VOG0226, VOG4566, VOG0186, VOG0186, VOG1309, VOG8241 |
| JTIX01000119.1 | 5982 | 16513 | False | Siphoviridae | VOG0204, VOG4568, VOG4556, VOG5051, VOG4544, VOG4581, VOG4841, VOG0205, VOG4609, VOG4632, VOG1581 |
| JTIX01000137.1 | 12741 | 41678 | False | Siphoviridae | VOG4649, VOG0054, VOG1637, VOG0648, VOG3498, VOG4763, VOG4633, VOG5793, VOG1898, VOG4589, VOG0204, VOG4553, VOG4573, VOG4556, VOG4544, VOG0519, VOG4841, VOG5699, VOG7136, VOG0198, VOG0044, VOG1298, VOG3643, VOG0982, VOG0189, VOG4799, VOG3642, VOG0181, VOG4552 |
| JTIX01000140.1 | 456 | 39242 | False | Siphoviridae | VOG4660, VOG4828, VOG4633, VOG0083, VOG2225, VOG4586, VOG0704, VOG0539, VOG4589, VOG0204, VOG5601, VOG4553, VOG4568, VOG4556, VOG3644, VOG4544, VOG4581, VOG4841, VOG1345, VOG4549, VOG10904, VOG4570, VOG3691, VOG0198, VOG0044, VOG3643, VOG6470, VOG2820, VOG4643, VOG0275, VOG0195, VOG0536, VOG9860, VOG0189, VOG4566, VOG10904, VOG0226, VOG0322, VOG0321, VOG3642, VOG4967, VOG0181, VOG4552, VOG5353, VOG8520, VOG0862, VOG7656, VOG3304 |
Phigaro v2.3.0 (Database: Aug. 2017 release)