Probiotic potential risk score
| ARGs (CARD) | VFs (VFDB) | PGs (PHI-base) | PPRS |
|---|---|---|---|
| 0 | 0 | 0 | 0.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| ARO accession | ARO name | Identity | Coverage | CARD name | Accession no. |
|---|---|---|---|---|---|
| No hit found | |||||
RGI v6.0.0 (Database: CARD Variants v4.0.0, Jul. 2022 release)
ResFinder
| Resistance gene | Identity | Coverage | Phenotype | Accession no. |
|---|---|---|---|---|
| No hit found | ||||
ResFinder v4.0 (Database: resfinder_db, May 2022 release)
AMRFinderPlus
| Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|
| No hit found | |||||
AMRFinderPlus v3.10.42 (Database: Oct. 2022 release)
Virulence factors
Virulence Factor Database (VFDB)
| Gene ID | Gene name | Identity | Coverage | e-value | VF name | VF category | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
BLASTN v2.8.1+ (Database: VFDB, Jun. 2022 release)
VirulenceFinder
| Database | Virulence factor | Identity | Coverage | Protein function | Accession no. |
|---|---|---|---|---|---|
| No hit found | |||||
VirulenceFinder v2.0.3 (Database: virulencefinder_db, Dec. 2022 release)
Pathogenic genes
PHI-base
| Protein ID | Gene name | Identity | Coverage | e-value | Function | Gene ID |
|---|---|---|---|---|---|---|
| No hit found | ||||||
BLASTP v2.8.1+ (Database: PHI-base v4.14, Nov. 2022 release)
Plasmid
PlasmidFinder
| Plasmid | Identity | Query / Template | Accession no. |
|---|---|---|---|
| No hit found | |||
PlasmidFinder 2.0.1 (Database: plasmidfinder_db, Jan. 2023 release)
Prophage
Phigaro
| Scaffold | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| LZDT01000001.1 | 2349 | 27657 | False | Siphoviridae | VOG0861, VOG0648, VOG8224, VOG10608, VOG1335, VOG6163, VOG1334, VOG1333, VOG4634, VOG0704, VOG1353, VOG1330, VOG4713, VOG1887, VOG3434, VOG4555, VOG4564, VOG7038, VOG0720, VOG4544, VOG0796, VOG0198, VOG0327, VOG3807, VOG9150 |
| LZDT01000005.1 | 6406 | 13287 | False | Siphoviridae | VOG0321, VOG4548, VOG10660, VOG0322, VOG6545, VOG4632, VOG4609 |
| LZDT01000005.1 | 13771 | 34086 | False | Siphoviridae | VOG3307, VOG6970, VOG3307, VOG6414, VOG3807, VOG2188, VOG7235, VOG0327, VOG6005, VOG0198, VOG4841, VOG4581, VOG1886, VOG0202, VOG4556, VOG4573, VOG4553, VOG0204, VOG10939, VOG8997, VOG0207, VOG4586, VOG4760 |
| LZDT01000014.1 | 4457 | 23527 | False | Siphoviridae | VOG6163, VOG0209, VOG4586, VOG0207, VOG8609, VOG0205, VOG0204, VOG4553, VOG4573, VOG4556, VOG4571, VOG1886, VOG4581 |
| LZDT01000021.1 | 6715 | 35966 | False | Siphoviridae | VOG0685, VOG0283, VOG5046, VOG11077, VOG4693, VOG0198, VOG3477, VOG0796, VOG4544, VOG0691, VOG0692, VOG5047, VOG4555, VOG1329, VOG0695, VOG0696, VOG0697, VOG0698, VOG9763, VOG0701, VOG4545, VOG0801, VOG4619, VOG5859, VOG5008 |
Phigaro v2.3.0 (Database: Aug. 2017 release)