Probiotic potential risk score
| ARGs (CARD) | VFs (VFDB) | PGs (PHI-base) | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| ARO accession | ARO name | Identity | Coverage | CARD name | Accession no. |
|---|---|---|---|---|---|
| No hit found | |||||
RGI v6.0.0 (Database: CARD Variants v4.0.0, Jul. 2022 release)
ResFinder
| Resistance gene | Identity | Coverage | Phenotype | Accession no. |
|---|---|---|---|---|
| ClpL | 98.20 | 100.00 | Disinfectant resistance | CP023753 |
ResFinder v4.0 (Database: resfinder_db, May 2022 release)
AMRFinderPlus
| Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|
| No hit found | |||||
AMRFinderPlus v3.10.42 (Database: Oct. 2022 release)
Virulence factors
Virulence Factor Database (VFDB)
| Gene ID | Gene name | Identity | Coverage | e-value | VF name | VF category | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
BLASTN v2.8.1+ (Database: VFDB, Jun. 2022 release)
VirulenceFinder
| Database | Virulence factor | Identity | Coverage | Protein function | Accession no. |
|---|---|---|---|---|---|
| No hit found | |||||
VirulenceFinder v2.0.3 (Database: virulencefinder_db, Dec. 2022 release)
Pathogenic genes
PHI-base
| Protein ID | Gene name | Identity | Coverage | e-value | Function | Gene ID |
|---|---|---|---|---|---|---|
| S4E4Q5 | WalR | 84.25 | 99.57 | 2.41e-146 | Transcriptional regulatory protein | EPH95667 |
| Q82ZX2 | CspR | 84.61 | 97.01 | 3.82e-37 | Cold shock protein | AAO82613 |
BLASTP v2.8.1+ (Database: PHI-base v4.14, Nov. 2022 release)
Plasmid
PlasmidFinder
| Plasmid | Identity | Query / Template | Accession no. |
|---|---|---|---|
| rep38 | 95.12 | 901 / 903 | CP005943 |
PlasmidFinder 2.0.1 (Database: plasmidfinder_db, Jan. 2023 release)
Prophage
Phigaro
| Scaffold | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| MKEB01000012.1 | 2035 | 20559 | False | Siphoviridae | VOG0691, VOG0692, VOG9317, VOG4711, VOG3772, VOG0695, VOG0696, VOG0697, VOG6548, VOG9763, VOG0701, VOG6163, VOG0801, VOG4619 |
| MKEB01000024.1 | 3752 | 16636 | False | Siphoviridae | VOG4632, VOG4609, VOG0205, VOG4841, VOG4581, VOG4544, VOG2935, VOG4556, VOG4568, VOG0204, VOG0198 |
| MKEB01000024.1 | 23974 | 48164 | False | Siphoviridae | VOG1309, VOG0186, VOG4566, VOG4693, VOG0198, VOG9667, VOG0796, VOG4544, VOG0691, VOG0692, VOG4555, VOG4572, VOG0695, VOG0696, VOG0697, VOG0698, VOG9763, VOG0701, VOG4910, VOG0801 |
| MKEB01000025.1 | 8368 | 39284 | False | Siphoviridae | VOG0685, VOG0283, VOG0226, VOG0514, VOG4636, VOG0189, VOG4693, VOG5258, VOG4567, VOG0044, VOG0044, VOG3643, VOG1049, VOG0198, VOG4841, VOG4581, VOG1886, VOG6939, VOG4556, VOG4568, VOG4553, VOG0205, VOG0207, VOG4586, VOG0209, VOG5904, VOG0801, VOG3462, VOG3463, VOG0753 |
| MKEB01000032.1 | 2028 | 24186 | False | Siphoviridae | VOG2124, VOG3699, VOG10227, VOG0720, VOG4564, VOG10914, VOG1329, VOG4713, VOG9583, VOG0724, VOG0799, VOG0725, VOG6163, VOG4633, VOG4599, VOG4619, VOG4856, VOG9640, VOG0804, VOG4705, VOG4918, VOG0753 |
Phigaro v2.3.0 (Database: Aug. 2017 release)