Probiotic potential risk score
| ARGs (CARD) | VFs (VFDB) | PGs (PHI-base) | PPRS |
|---|---|---|---|
| 3 | 1 | 4 | 5.10 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| ARO accession | ARO name | Identity | Coverage | CARD name | Accession no. |
|---|---|---|---|---|---|
| ARO:3000600 | Erm(34) | 100.00 | 100.00 | Erm(34) | AY234334.1 |
| ARO:3002816 | clbC | 97.14 | 100.00 | clbC | AP006627.1 |
| ARO:3002623 | ANT(4')-Ia | 94.14 | 100.00 | ANT(4')-Ia | EF540343.1 |
RGI v6.0.0 (Database: CARD Variants v4.0.0, Jul. 2022 release)
ResFinder
| Resistance gene | Identity | Coverage | Phenotype | Accession no. |
|---|---|---|---|---|
| erm(34) | 100.00 | 100.00 | Macrolide resistance | AY234334 |
| ant(4')-Ib | 94.16 | 100.00 | Aminoglycoside resistance | AJ506108 |
ResFinder v4.0 (Database: resfinder_db, May 2022 release)
AMRFinderPlus
| Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|
| erm(34) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(34) | EXACTX | 100.00 | 100.00 | WP_063844504.1 |
| clbB | 23S rRNA (adenine(2503)-C(8))-methyltransferase ClbB | BLASTX | 97.14 | 100.00 | WP_011245929.1 |
| blaBCL | BCL family class A beta-lactamase | BLASTX | 96.68 | 100.00 | WP_065825670.1 |
| aadD2 | aminoglycoside O-nucleotidyltransferase ANT(4')-Ib | BLASTX | 94.14 | 100.00 | WP_035202393.1 |
AMRFinderPlus v3.10.42 (Database: Oct. 2022 release)
Virulence factors
Virulence Factor Database (VFDB)
| Gene ID | Gene name | Identity | Coverage | e-value | VF name | VF category | Accession no. |
|---|---|---|---|---|---|---|---|
| VFG016238 | hlyIII | 97.23 | 100.00 | 0.0 | Hemolysin III | Exotoxin | WP_011247375 |
BLASTN v2.8.1+ (Database: VFDB, Jun. 2022 release)
VirulenceFinder
| Database | Virulence factor | Identity | Coverage | Protein function | Accession no. |
|---|---|---|---|---|---|
| No hit found | |||||
VirulenceFinder v2.0.3 (Database: virulencefinder_db, Dec. 2022 release)
Pathogenic genes
PHI-base
| Protein ID | Gene name | Identity | Coverage | e-value | Function | Gene ID |
|---|---|---|---|---|---|---|
| W8TRT9 | tufA | 86.87 | 99.75 | 0.0 | Elongation factor Tu | AHM69299 |
| Q724L7 | SpoVG | 81.48 | 78.64 | 7.05e-45 | RNA-Binding Protein | AAT02994 |
| P0A355 | CspA | 86.36 | 98.51 | 5.97e-38 | Cold shock protein | CAA62903 |
| P0A357 | CspB | 82.54 | 94.03 | 1.22e-32 | Cold shock protein | CAD00094 |
BLASTP v2.8.1+ (Database: PHI-base v4.14, Nov. 2022 release)
Plasmid
PlasmidFinder
| Plasmid | Identity | Query / Template | Accession no. |
|---|---|---|---|
| No hit found | |||
PlasmidFinder 2.0.1 (Database: plasmidfinder_db, Jan. 2023 release)
Prophage
Phigaro
| Scaffold | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| CP019985.1 | 3207773 | 3245534 | False | Siphoviridae | VOG10137, VOG4841, VOG4581, VOG3920, VOG3607, VOG4556, VOG4568, VOG4553, VOG7168, VOG0204, VOG4589, VOG0539, VOG0704, VOG4586, VOG0541, VOG4910, VOG0801, VOG4660, VOG5384, VOG3390, VOG4705, VOG4619, VOG0641, VOG8236, VOG0018, VOG6116, VOG0866, VOG0047, VOG4602, VOG8520, VOG5353, VOG4552, VOG0468, VOG6414, VOG6931, VOG0535, VOG1936, VOG4606 |
Phigaro v2.3.0 (Database: Aug. 2017 release)