Probiotic potential risk score
| ARGs (CARD) | VFs (VFDB) | PGs (PHI-base) | PPRS |
|---|---|---|---|
| 0 | 0 | 1 | 1.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| ARO accession | ARO name | Identity | Coverage | CARD name | Accession no. |
|---|---|---|---|---|---|
| No hit found | |||||
RGI v6.0.0 (Database: CARD Variants v4.0.0, Jul. 2022 release)
ResFinder
| Resistance gene | Identity | Coverage | Phenotype | Accession no. |
|---|---|---|---|---|
| No hit found | ||||
ResFinder v4.0 (Database: resfinder_db, May 2022 release)
AMRFinderPlus
| Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|
| No hit found | |||||
AMRFinderPlus v3.10.42 (Database: Oct. 2022 release)
Virulence factors
Virulence Factor Database (VFDB)
| Gene ID | Gene name | Identity | Coverage | e-value | VF name | VF category | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
BLASTN v2.8.1+ (Database: VFDB, Jun. 2022 release)
VirulenceFinder
| Database | Virulence factor | Identity | Coverage | Protein function | Accession no. |
|---|---|---|---|---|---|
| No hit found | |||||
VirulenceFinder v2.0.3 (Database: virulencefinder_db, Dec. 2022 release)
Pathogenic genes
PHI-base
| Protein ID | Gene name | Identity | Coverage | e-value | Function | Gene ID |
|---|---|---|---|---|---|---|
| P0A355 | CspA | 84.61 | 97.01 | 3.96e-36 | Cold shock protein | CAA62903 |
BLASTP v2.8.1+ (Database: PHI-base v4.14, Nov. 2022 release)
Plasmid
PlasmidFinder
| Plasmid | Identity | Query / Template | Accession no. |
|---|---|---|---|
| No hit found | |||
PlasmidFinder 2.0.1 (Database: plasmidfinder_db, Jan. 2023 release)
Prophage
Phigaro
| Scaffold | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| NGPM01000109.1 | 55137 | 77514 | False | Siphoviridae | VOG1637, VOG4626, VOG9997, VOG0565, VOG10972, VOG3462, VOG0801, VOG4545, VOG0660, VOG0209, VOG0207, VOG0205, VOG0204, VOG4553, VOG4573, VOG4556, VOG0202, VOG1886 |
| NGPM01000020.1 | 3248 | 25630 | False | Siphoviridae | VOG0641, VOG0648, VOG5007, VOG4599, VOG0727, VOG4545, VOG0800, VOG0725, VOG0799, VOG0724, VOG5660, VOG0723, VOG4713, VOG1319, VOG10914, VOG4564, VOG0720, VOG10227, VOG0796, VOG0198 |
| NGPM01000022.1 | 6539 | 35058 | False | Siphoviridae | VOG4010, VOG5280, VOG5317, VOG0686, VOG0198, VOG5967, VOG0630, VOG0866, VOG4841, VOG4581, VOG4544, VOG0202, VOG4556, VOG4568, VOG4553, VOG0204, VOG4589, VOG0539, VOG0704, VOG4586, VOG2225, VOG9471, VOG6163, VOG0801, VOG3462, VOG4887, VOG5008 |
| NGPM01000028.1 | 689 | 22766 | False | Siphoviridae | VOG10227, VOG0720, VOG4564, VOG0638, VOG4555, VOG1329, VOG4713, VOG1353, VOG0724, VOG0799, VOG0725, VOG4545, VOG0801, VOG3462, VOG5070, VOG0641, VOG0703 |
| NGPM01000054.1 | 41730 | 55818 | False | Siphoviridae | VOG3490, VOG4714, VOG0198, VOG0204, VOG4568, VOG4556, VOG4544, VOG4581, VOG4841, VOG0205, VOG4606, VOG4632, VOG0542 |
Phigaro v2.3.0 (Database: Aug. 2017 release)