Probiotic potential risk score
| ARGs (CARD) | VFs (VFDB) | PGs (PHI-base) | PPRS |
|---|---|---|---|
| 0 | 0 | 1 | 1.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| ARO accession | ARO name | Identity | Coverage | CARD name | Accession no. |
|---|---|---|---|---|---|
| No hit found | |||||
RGI v6.0.0 (Database: CARD Variants v4.0.0, Jul. 2022 release)
ResFinder
| Resistance gene | Identity | Coverage | Phenotype | Accession no. |
|---|---|---|---|---|
| ClpL | 98.11 | 100.00 | Disinfectant resistance | CP023753 |
ResFinder v4.0 (Database: resfinder_db, May 2022 release)
AMRFinderPlus
| Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|
| No hit found | |||||
AMRFinderPlus v3.10.42 (Database: Oct. 2022 release)
Virulence factors
Virulence Factor Database (VFDB)
| Gene ID | Gene name | Identity | Coverage | e-value | VF name | VF category | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
BLASTN v2.8.1+ (Database: VFDB, Jun. 2022 release)
VirulenceFinder
| Database | Virulence factor | Identity | Coverage | Protein function | Accession no. |
|---|---|---|---|---|---|
| No hit found | |||||
VirulenceFinder v2.0.3 (Database: virulencefinder_db, Dec. 2022 release)
Pathogenic genes
PHI-base
| Protein ID | Gene name | Identity | Coverage | e-value | Function | Gene ID |
|---|---|---|---|---|---|---|
| S4E4Q5 | WalR | 80.77 | 99.15 | 1.75e-139 | Transcriptional regulatory protein | EPH95667 |
BLASTP v2.8.1+ (Database: PHI-base v4.14, Nov. 2022 release)
Plasmid
PlasmidFinder
| Plasmid | Identity | Query / Template | Accession no. |
|---|---|---|---|
| rep28 | 99.25 | 936 / 936 | CP005948 |
PlasmidFinder 2.0.1 (Database: plasmidfinder_db, Jan. 2023 release)
Prophage
Phigaro
| Scaffold | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| NVYO01000001.1 | 1016826 | 1068707 | False | Myoviridae | VOG0377, VOG1292, VOG4549, VOG10391, VOG0275, VOG8483, VOG3412, VOG0862, VOG8520, VOG1656, VOG4552, VOG6450, VOG0650, VOG6495, VOG0685, VOG0322, VOG0226, VOG4799, VOG0025, VOG0514, VOG6005, VOG5545, VOG0536, VOG0052, VOG0195, VOG0044, VOG3643, VOG0149, VOG0198, VOG5446, VOG0796, VOG0275, VOG4544, VOG0720, VOG4564, VOG4555, VOG3434, VOG1887, VOG4710, VOG1353, VOG1881, VOG1883, VOG1352, VOG4699, VOG4910, VOG1956, VOG1433, VOG1348, VOG0573, VOG4691, VOG4845, VOG7230, VOG3298, VOG3298 |
| NVYO01000001.1 | 1458754 | 1483434 | False | Myoviridae | VOG4845, VOG4691, VOG4550, VOG1348, VOG1433, VOG1956, VOG4910, VOG4699, VOG1352, VOG1883, VOG1881, VOG1353, VOG1887, VOG3434, VOG10914, VOG4564, VOG0720, VOG4544, VOG0796 |
| NVYO01000001.1 | 1491701 | 1495662 | False | Unknown | VOG9706, VOG2085, VOG0655, VOG11075, VOG11003, VOG6179 |
| NVYO01000001.1 | 1707218 | 1746505 | False | Siphoviridae | VOG0703, VOG4705, VOG9955, VOG10972, VOG4599, VOG4605, VOG5904, VOG0209, VOG4586, VOG0207, VOG0205, VOG0204, VOG4553, VOG4573, VOG4556, VOG4544, VOG4581, VOG4214, VOG6725, VOG0198, VOG5088, VOG0044, VOG8425, VOG3480, VOG0052, VOG4566, VOG0514, VOG10904, VOG0226, VOG0283, VOG0321, VOG6888, VOG0650, VOG5088, VOG7724, VOG2124 |
Phigaro v2.3.0 (Database: Aug. 2017 release)