Probiotic potential risk score
| ARGs (CARD) | VFs (VFDB) | PGs (PHI-base) | PPRS |
|---|---|---|---|
| 1 | 0 | 2 | 2.24 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| ARO accession | ARO name | Identity | Coverage | CARD name | Accession no. |
|---|---|---|---|---|---|
| ARO:3000186 | tet(M) | 94.37 | 100.00 | tet(M) | AB039845.1 |
RGI v6.0.0 (Database: CARD Variants v4.0.0, Jul. 2022 release)
ResFinder
| Resistance gene | Identity | Coverage | Phenotype | Accession no. |
|---|---|---|---|---|
| tet(M) | 99.27 | 100.00 | Tetracycline resistance | EU182585 |
ResFinder v4.0 (Database: resfinder_db, May 2022 release)
AMRFinderPlus
| Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|
| tet(M) | tetracycline resistance ribosomal protection protein Tet(M) | BLASTX | 99.06 | 100.00 | WP_002364936.1 |
AMRFinderPlus v3.10.42 (Database: Oct. 2022 release)
Virulence factors
Virulence Factor Database (VFDB)
| Gene ID | Gene name | Identity | Coverage | e-value | VF name | VF category | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
BLASTN v2.8.1+ (Database: VFDB, Jun. 2022 release)
VirulenceFinder
| Database | Virulence factor | Identity | Coverage | Protein function | Accession no. |
|---|---|---|---|---|---|
| No hit found | |||||
VirulenceFinder v2.0.3 (Database: virulencefinder_db, Dec. 2022 release)
Pathogenic genes
PHI-base
| Protein ID | Gene name | Identity | Coverage | e-value | Function | Gene ID |
|---|---|---|---|---|---|---|
| S4E4Q5 | WalR | 85.59 | 100.00 | 3.11e-148 | Transcriptional regulatory protein | EPH95667 |
| Q82ZX2 | CspR | 81.82 | 98.51 | 2.68e-36 | Cold shock protein | AAO82613 |
BLASTP v2.8.1+ (Database: PHI-base v4.14, Nov. 2022 release)
Plasmid
PlasmidFinder
| Plasmid | Identity | Query / Template | Accession no. |
|---|---|---|---|
| repUS43 | 99.83 | 1206 / 1206 | CP003584 |
PlasmidFinder 2.0.1 (Database: plasmidfinder_db, Jan. 2023 release)
Prophage
Phigaro
| Scaffold | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| PECX01000001.1 | 799333 | 802221 | False | Myoviridae | VOG6758, VOG2215, VOG3622, VOG4552 |
| PECX01000001.1 | 813245 | 838319 | False | Siphoviridae | VOG10418, VOG0275, VOG0195, VOG2246, VOG0198, VOG8681, VOG0638, VOG4841, VOG4844, VOG4556, VOG4573, VOG4553, VOG0562, VOG4589, VOG0539, VOG0704, VOG4586, VOG5852, VOG6163, VOG4633, VOG4828, VOG5008, VOG5008, VOG1637 |
| PECX01000001.1 | 1022345 | 1054257 | False | Siphoviridae | VOG4828, VOG4633, VOG5793, VOG0701, VOG9763, VOG0698, VOG0697, VOG0696, VOG0695, VOG4555, VOG0692, VOG0691, VOG4544, VOG3699, VOG8681, VOG10597, VOG0198, VOG7235, VOG10560, VOG5878, VOG0637, VOG5545, VOG0327, VOG4609, VOG4632, VOG6545, VOG0322, VOG4548, VOG0321, VOG3947, VOG3478, VOG4552, VOG9667 |
| PECX01000001.1 | 1177685 | 1210188 | False | Siphoviridae | VOG5457, VOG8294, VOG0703, VOG1637, VOG5008, VOG5904, VOG4633, VOG4545, VOG0800, VOG0725, VOG0799, VOG0724, VOG5660, VOG0723, VOG4713, VOG1319, VOG10914, VOG0686, VOG0638, VOG4564, VOG0720, VOG3699, VOG8681, VOG0198, VOG7235, VOG5545, VOG0327, VOG4609, VOG4632, VOG6545, VOG0322, VOG4548, VOG0321, VOG6357, VOG9667 |
Phigaro v2.3.0 (Database: Aug. 2017 release)